Hb_004126_010

Information

Type -
Description -
Location Contig4126: 25972-30338
Sequence    

Annotation

kegg
ID rcu:RCOM_1674400
description protein-tyrosine kinase, putative (EC:2.7.11.25)
nr
ID XP_012091613.1
description PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
swissprot
ID Q2MHE4
description Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1
trembl
ID A0A067JN83
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21450 PE=4 SV=1
Gene Ontology
ID GO:0004674
description serine threonine-protein kinase ht1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40830: 26150-30397
cDNA
(Sanger)
(ID:Location)		 007_H10.ab1: 29269-30343 , 009_D08.ab1: 29733-30364 , 029_M10.ab1: 29454-30397 , 051_A13.ab1: 29296-30336

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004126_010 0.0 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
2 Hb_009510_030 0.051855319 - - PREDICTED: phosphoinositide phospholipase C 2-like [Jatropha curcas]
3 Hb_014067_010 0.0739095505 - - hypothetical protein JCGZ_09524 [Jatropha curcas]
4 Hb_026048_090 0.0777657394 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000057_060 0.0823723642 - - PREDICTED: uncharacterized protein LOC105634990 isoform X4 [Jatropha curcas]
6 Hb_003001_030 0.083791642 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
7 Hb_002506_010 0.0845997765 - - choline transporter-related family protein [Populus trichocarpa]
8 Hb_005730_020 0.0889049983 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF3.1-like [Jatropha curcas]
9 Hb_003404_030 0.0915086117 - - PREDICTED: monogalactosyldiacylglycerol synthase 2, chloroplastic-like isoform X1 [Jatropha curcas]
10 Hb_003627_020 0.0932399108 - - PREDICTED: probable calcium-binding protein CML49 [Jatropha curcas]
11 Hb_019613_020 0.094566923 - - phospholipase C, putative [Ricinus communis]
12 Hb_127979_010 0.0951955103 - - PREDICTED: uncharacterized protein LOC105629383 [Jatropha curcas]
13 Hb_007178_010 0.0988870978 - - pseudo-hevein [Hevea brasiliensis]
14 Hb_010931_100 0.099517095 - - PREDICTED: uncharacterized protein LOC105638669 [Jatropha curcas]
15 Hb_002038_060 0.10111398 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC100265010 [Vitis vinifera]
16 Hb_005488_100 0.1013968539 - - hypothetical protein JCGZ_00295 [Jatropha curcas]
17 Hb_002067_160 0.1016465879 - - Protein MLO, putative [Ricinus communis]
18 Hb_026048_100 0.1019434939 - - PREDICTED: putative cell division cycle ATPase [Jatropha curcas]
19 Hb_000249_110 0.1020658955 - - hypothetical protein JCGZ_22462 [Jatropha curcas]
20 Hb_003906_110 0.1023301111 - - PREDICTED: molybdenum cofactor sulfurase [Jatropha curcas]

Gene co-expression network

sample Hb_004126_010 Hb_004126_010 Hb_009510_030 Hb_009510_030 Hb_004126_010--Hb_009510_030 Hb_014067_010 Hb_014067_010 Hb_004126_010--Hb_014067_010 Hb_026048_090 Hb_026048_090 Hb_004126_010--Hb_026048_090 Hb_000057_060 Hb_000057_060 Hb_004126_010--Hb_000057_060 Hb_003001_030 Hb_003001_030 Hb_004126_010--Hb_003001_030 Hb_002506_010 Hb_002506_010 Hb_004126_010--Hb_002506_010 Hb_009510_030--Hb_002506_010 Hb_009510_030--Hb_026048_090 Hb_000771_140 Hb_000771_140 Hb_009510_030--Hb_000771_140 Hb_009510_030--Hb_000057_060 Hb_009510_030--Hb_003001_030 Hb_000249_110 Hb_000249_110 Hb_014067_010--Hb_000249_110 Hb_138413_010 Hb_138413_010 Hb_014067_010--Hb_138413_010 Hb_002843_160 Hb_002843_160 Hb_014067_010--Hb_002843_160 Hb_005730_020 Hb_005730_020 Hb_014067_010--Hb_005730_020 Hb_014067_010--Hb_009510_030 Hb_127979_010 Hb_127979_010 Hb_026048_090--Hb_127979_010 Hb_026048_090--Hb_000771_140 Hb_026048_090--Hb_000057_060 Hb_001433_170 Hb_001433_170 Hb_026048_090--Hb_001433_170 Hb_000057_060--Hb_001433_170 Hb_003404_030 Hb_003404_030 Hb_000057_060--Hb_003404_030 Hb_000057_060--Hb_000771_140 Hb_000057_060--Hb_127979_010 Hb_000057_060--Hb_002506_010 Hb_114684_020 Hb_114684_020 Hb_003001_030--Hb_114684_020 Hb_003001_030--Hb_005730_020 Hb_002609_260 Hb_002609_260 Hb_003001_030--Hb_002609_260 Hb_003001_030--Hb_000249_110 Hb_002506_010--Hb_003404_030 Hb_001017_090 Hb_001017_090 Hb_002506_010--Hb_001017_090 Hb_010174_130 Hb_010174_130 Hb_002506_010--Hb_010174_130 Hb_000387_080 Hb_000387_080 Hb_002506_010--Hb_000387_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
402.674 37.8515 14.877 25.6479 425.874 542.272
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
280.669 197.58 342.547 35.5592 11.0523

CAGE analysis