Hb_004126_040

Information

Type -
Description -
Location Contig4126: 54888-60470
Sequence    

Annotation

kegg
ID rcu:RCOM_1674860
description hypothetical protein
nr
ID XP_002509470.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RBD6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1674860 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40832: 55106-60457 , PASA_asmbl_40834: 58577-58931
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004126_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000256_230 0.0639309252 - - PREDICTED: uncharacterized protein LOC105637594 [Jatropha curcas]
3 Hb_000389_030 0.0681857533 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1B [Jatropha curcas]
4 Hb_000665_170 0.0773743205 - - PREDICTED: probable beta-1,3-galactosyltransferase 10 [Jatropha curcas]
5 Hb_003209_130 0.078681074 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
6 Hb_000622_110 0.0821929417 - - cmp-sialic acid transporter, putative [Ricinus communis]
7 Hb_003878_200 0.0823023937 - - PREDICTED: V-type proton ATPase subunit D-like [Jatropha curcas]
8 Hb_004525_040 0.0852233315 - - PREDICTED: sugar transporter ERD6-like 6 [Jatropha curcas]
9 Hb_000035_220 0.0865028522 - - PREDICTED: transmembrane 9 superfamily member 8 [Jatropha curcas]
10 Hb_000926_340 0.0873795319 - - PREDICTED: EH domain-containing protein 1 isoform X1 [Jatropha curcas]
11 Hb_002486_050 0.0893151176 - - Multiple inositol polyphosphate phosphatase 1 precursor, putative [Ricinus communis]
12 Hb_000418_020 0.0960778183 - - PREDICTED: sulfhydryl oxidase 2 isoform X1 [Jatropha curcas]
13 Hb_003540_080 0.1012083419 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
14 Hb_000002_480 0.1014692258 - - PREDICTED: protein WVD2-like 1 isoform X2 [Jatropha curcas]
15 Hb_014361_060 0.1033066694 - - PREDICTED: probable prolyl 4-hydroxylase 9 [Jatropha curcas]
16 Hb_021576_070 0.1066604997 - - hypothetical protein PRUPE_ppa002736mg [Prunus persica]
17 Hb_005535_080 0.1066775805 - - hypothetical protein CICLE_v10012766mg [Citrus clementina]
18 Hb_003998_040 0.1082221513 - - organic anion transporter, putative [Ricinus communis]
19 Hb_011486_060 0.1089372802 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000622_350 0.1092091307 - - PREDICTED: protein ABIL1 [Jatropha curcas]

Gene co-expression network

sample Hb_004126_040 Hb_004126_040 Hb_000256_230 Hb_000256_230 Hb_004126_040--Hb_000256_230 Hb_000389_030 Hb_000389_030 Hb_004126_040--Hb_000389_030 Hb_000665_170 Hb_000665_170 Hb_004126_040--Hb_000665_170 Hb_003209_130 Hb_003209_130 Hb_004126_040--Hb_003209_130 Hb_000622_110 Hb_000622_110 Hb_004126_040--Hb_000622_110 Hb_003878_200 Hb_003878_200 Hb_004126_040--Hb_003878_200 Hb_000256_230--Hb_000665_170 Hb_000256_230--Hb_000389_030 Hb_000256_230--Hb_003209_130 Hb_000256_230--Hb_000622_110 Hb_002486_050 Hb_002486_050 Hb_000256_230--Hb_002486_050 Hb_001021_010 Hb_001021_010 Hb_000389_030--Hb_001021_010 Hb_000389_030--Hb_000665_170 Hb_004525_040 Hb_004525_040 Hb_000389_030--Hb_004525_040 Hb_000009_060 Hb_000009_060 Hb_000389_030--Hb_000009_060 Hb_003777_030 Hb_003777_030 Hb_000665_170--Hb_003777_030 Hb_010672_020 Hb_010672_020 Hb_000665_170--Hb_010672_020 Hb_000665_170--Hb_003209_130 Hb_007545_010 Hb_007545_010 Hb_000665_170--Hb_007545_010 Hb_003209_130--Hb_002486_050 Hb_005535_080 Hb_005535_080 Hb_003209_130--Hb_005535_080 Hb_003209_130--Hb_000622_110 Hb_005062_110 Hb_005062_110 Hb_000622_110--Hb_005062_110 Hb_000622_110--Hb_002486_050 Hb_000926_340 Hb_000926_340 Hb_000622_110--Hb_000926_340 Hb_086639_080 Hb_086639_080 Hb_000622_110--Hb_086639_080 Hb_003878_200--Hb_000389_030 Hb_003878_200--Hb_000665_170 Hb_003878_200--Hb_000256_230 Hb_002928_090 Hb_002928_090 Hb_003878_200--Hb_002928_090 Hb_003998_040 Hb_003998_040 Hb_003878_200--Hb_003998_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.06996 4.39706 9.8508 23.1632 4.5007 4.81236
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.25164 4.48119 3.25978 7.47809 8.68089

CAGE analysis