Hb_004126_070

Information

Type desease resistance
Description Gene Name: CDC48_2
Location Contig4126: 82740-94615
Sequence    

Annotation

kegg
ID pop:POPTR_0004s04380g
description POPTRDRAFT_831118; Vesicle-fusing ATPase family protein
nr
ID XP_012091606.1
description PREDICTED: vesicle-fusing ATPase [Jatropha curcas]
swissprot
ID Q9M0Y8
description Vesicle-fusing ATPase OS=Arabidopsis thaliana GN=NSF PE=2 SV=2
trembl
ID A0A067JN78
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21445 PE=3 SV=1
Gene Ontology
ID GO:0005524
description vesicle-fusing atpase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004126_070 0.0 desease resistance Gene Name: CDC48_2 PREDICTED: vesicle-fusing ATPase [Jatropha curcas]
2 Hb_000108_190 0.0772155218 - - PREDICTED: dihydroorotate dehydrogenase (quinone), mitochondrial [Jatropha curcas]
3 Hb_000841_020 0.0823615875 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Populus euphratica]
4 Hb_001897_040 0.0837496598 - - 26S proteasome non-atpase regulatory subunit, putative [Ricinus communis]
5 Hb_000291_080 0.0838442668 - - Vacuolar protein sorting-associated protein VPS9, putative [Ricinus communis]
6 Hb_032264_110 0.0917090938 - - PREDICTED: uncharacterized protein LOC105648219 [Jatropha curcas]
7 Hb_001059_030 0.0922862636 - - PREDICTED: F-box protein At5g03100-like [Solanum lycopersicum]
8 Hb_000086_280 0.0943293047 - - PREDICTED: vacuolar protein sorting-associated protein 2 homolog 3-like [Gossypium raimondii]
9 Hb_005645_010 0.0977268488 - - rhythmically-expressed protein 2 protein, putative [Ricinus communis]
10 Hb_000622_090 0.1000046917 - - PREDICTED: mitochondrial adenine nucleotide transporter ADNT1 [Jatropha curcas]
11 Hb_004696_080 0.1036528125 - - PREDICTED: uncharacterized protein At1g01500-like [Populus euphratica]
12 Hb_158467_010 0.1040733465 - - transporter, putative [Ricinus communis]
13 Hb_027073_050 0.1052694885 - - PREDICTED: uncharacterized protein LOC105635813 isoform X2 [Jatropha curcas]
14 Hb_000482_090 0.1054168334 - - PREDICTED: uncharacterized protein LOC105638145 [Jatropha curcas]
15 Hb_032803_010 0.1056479043 - - PREDICTED: glycosyltransferase-like At2g41451 [Jatropha curcas]
16 Hb_002005_020 0.1069371488 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004994_100 0.1069634274 - - acyl-CoA thioesterase, putative [Ricinus communis]
18 Hb_010422_060 0.1080954701 - - PREDICTED: GLABRA2 expression modulator [Jatropha curcas]
19 Hb_000617_150 0.1085065133 - - PREDICTED: pentatricopeptide repeat-containing protein At3g61360-like [Jatropha curcas]
20 Hb_000120_680 0.1092435782 - - PREDICTED: uncharacterized protein LOC105628572 [Jatropha curcas]

Gene co-expression network

sample Hb_004126_070 Hb_004126_070 Hb_000108_190 Hb_000108_190 Hb_004126_070--Hb_000108_190 Hb_000841_020 Hb_000841_020 Hb_004126_070--Hb_000841_020 Hb_001897_040 Hb_001897_040 Hb_004126_070--Hb_001897_040 Hb_000291_080 Hb_000291_080 Hb_004126_070--Hb_000291_080 Hb_032264_110 Hb_032264_110 Hb_004126_070--Hb_032264_110 Hb_001059_030 Hb_001059_030 Hb_004126_070--Hb_001059_030 Hb_000120_020 Hb_000120_020 Hb_000108_190--Hb_000120_020 Hb_000108_190--Hb_000841_020 Hb_028515_010 Hb_028515_010 Hb_000108_190--Hb_028515_010 Hb_000108_190--Hb_000291_080 Hb_002742_090 Hb_002742_090 Hb_000108_190--Hb_002742_090 Hb_000398_040 Hb_000398_040 Hb_000841_020--Hb_000398_040 Hb_017225_020 Hb_017225_020 Hb_000841_020--Hb_017225_020 Hb_002111_040 Hb_002111_040 Hb_000841_020--Hb_002111_040 Hb_009113_070 Hb_009113_070 Hb_000841_020--Hb_009113_070 Hb_001811_030 Hb_001811_030 Hb_001897_040--Hb_001811_030 Hb_000922_390 Hb_000922_390 Hb_001897_040--Hb_000922_390 Hb_001014_040 Hb_001014_040 Hb_001897_040--Hb_001014_040 Hb_003470_090 Hb_003470_090 Hb_001897_040--Hb_003470_090 Hb_001897_040--Hb_000291_080 Hb_001390_130 Hb_001390_130 Hb_000291_080--Hb_001390_130 Hb_000291_080--Hb_002111_040 Hb_000820_090 Hb_000820_090 Hb_000291_080--Hb_000820_090 Hb_003697_040 Hb_003697_040 Hb_000291_080--Hb_003697_040 Hb_004696_080 Hb_004696_080 Hb_000291_080--Hb_004696_080 Hb_000363_360 Hb_000363_360 Hb_000291_080--Hb_000363_360 Hb_158467_010 Hb_158467_010 Hb_032264_110--Hb_158467_010 Hb_001009_270 Hb_001009_270 Hb_032264_110--Hb_001009_270 Hb_010655_010 Hb_010655_010 Hb_032264_110--Hb_010655_010 Hb_008300_010 Hb_008300_010 Hb_032264_110--Hb_008300_010 Hb_000510_320 Hb_000510_320 Hb_032264_110--Hb_000510_320 Hb_000656_040 Hb_000656_040 Hb_032264_110--Hb_000656_040 Hb_004635_100 Hb_004635_100 Hb_001059_030--Hb_004635_100 Hb_010422_060 Hb_010422_060 Hb_001059_030--Hb_010422_060 Hb_012053_070 Hb_012053_070 Hb_001059_030--Hb_012053_070 Hb_000062_220 Hb_000062_220 Hb_001059_030--Hb_000062_220 Hb_000240_090 Hb_000240_090 Hb_001059_030--Hb_000240_090 Hb_000059_370 Hb_000059_370 Hb_001059_030--Hb_000059_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.67531 1.27869 2.45027 3.97727 5.52981 3.20159
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.9272 7.8401 9.04994 3.9947 2.46177

CAGE analysis