Hb_004127_010

Information

Type -
Description -
Location Contig4127: 6759-9491
Sequence    

Annotation

kegg
ID mdm:103408993
description probable RNA 3'-terminal phosphate cyclase-like protein
nr
ID XP_008346029.1
description PREDICTED: probable RNA 3'-terminal phosphate cyclase-like protein [Malus domestica]
swissprot
ID Q08096
description RNA 3'-terminal phosphate cyclase-like protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RCL1 PE=1 SV=1
trembl
ID W1NMR7
description Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00128p00105630 PE=4 SV=1
Gene Ontology
ID GO:0005730
description probable rna 3 -terminal phosphate cyclase-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40842: 6689-20849 , PASA_asmbl_40843: 6841-7936
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004127_010 0.0 - - PREDICTED: probable RNA 3'-terminal phosphate cyclase-like protein [Malus domestica]
2 Hb_011224_060 0.0947383823 - - hypothetical protein POPTR_0011s16880g [Populus trichocarpa]
3 Hb_029921_040 0.102472767 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000093_160 0.1034930173 - - PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X1 [Jatropha curcas]
5 Hb_033153_070 0.1035353335 - - PREDICTED: uncharacterized protein LOC105649606 isoform X1 [Jatropha curcas]
6 Hb_005618_160 0.1039358622 - - PREDICTED: putative proline--tRNA ligase C19C7.06 [Jatropha curcas]
7 Hb_002739_050 0.1054745477 - - PREDICTED: uncharacterized aarF domain-containing protein kinase 1 isoform X2 [Jatropha curcas]
8 Hb_001586_040 0.1055684254 - - hypothetical protein JCGZ_17187 [Jatropha curcas]
9 Hb_000189_340 0.1064206959 - - PREDICTED: 40S ribosomal protein S3a-1 [Jatropha curcas]
10 Hb_000340_300 0.1071437582 - - methyl-CpG-binding domain-containing family protein [Populus trichocarpa]
11 Hb_002296_050 0.1072273355 - - hypothetical protein AMTR_s00001p00247600 [Amborella trichopoda]
12 Hb_012022_160 0.1086397674 - - PREDICTED: uncharacterized protein LOC105646602 [Jatropha curcas]
13 Hb_000062_430 0.1089313703 - - PREDICTED: uncharacterized protein LOC105644764 isoform X1 [Jatropha curcas]
14 Hb_002495_040 0.1096787068 - - PREDICTED: chaperone protein dnaJ 6 isoform X1 [Jatropha curcas]
15 Hb_010068_040 0.1145149428 - - PREDICTED: uncharacterized protein LOC105632964 [Jatropha curcas]
16 Hb_097783_020 0.1155389984 - - PREDICTED: small G protein signaling modulator 1 [Jatropha curcas]
17 Hb_000742_140 0.1157906372 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004032_430 0.1158090848 - - PREDICTED: uncharacterized protein LOC105635169 [Jatropha curcas]
19 Hb_004116_060 0.1160379656 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
20 Hb_001430_120 0.1164543692 - - PREDICTED: DNA polymerase delta subunit 4 [Jatropha curcas]

Gene co-expression network

sample Hb_004127_010 Hb_004127_010 Hb_011224_060 Hb_011224_060 Hb_004127_010--Hb_011224_060 Hb_029921_040 Hb_029921_040 Hb_004127_010--Hb_029921_040 Hb_000093_160 Hb_000093_160 Hb_004127_010--Hb_000093_160 Hb_033153_070 Hb_033153_070 Hb_004127_010--Hb_033153_070 Hb_005618_160 Hb_005618_160 Hb_004127_010--Hb_005618_160 Hb_002739_050 Hb_002739_050 Hb_004127_010--Hb_002739_050 Hb_004032_430 Hb_004032_430 Hb_011224_060--Hb_004032_430 Hb_003050_200 Hb_003050_200 Hb_011224_060--Hb_003050_200 Hb_003292_040 Hb_003292_040 Hb_011224_060--Hb_003292_040 Hb_011970_030 Hb_011970_030 Hb_011224_060--Hb_011970_030 Hb_097783_020 Hb_097783_020 Hb_011224_060--Hb_097783_020 Hb_003935_020 Hb_003935_020 Hb_011224_060--Hb_003935_020 Hb_000189_340 Hb_000189_340 Hb_029921_040--Hb_000189_340 Hb_002687_130 Hb_002687_130 Hb_029921_040--Hb_002687_130 Hb_002495_040 Hb_002495_040 Hb_029921_040--Hb_002495_040 Hb_000373_240 Hb_000373_240 Hb_029921_040--Hb_000373_240 Hb_114343_010 Hb_114343_010 Hb_029921_040--Hb_114343_010 Hb_000272_020 Hb_000272_020 Hb_029921_040--Hb_000272_020 Hb_003010_030 Hb_003010_030 Hb_000093_160--Hb_003010_030 Hb_003428_030 Hb_003428_030 Hb_000093_160--Hb_003428_030 Hb_096563_010 Hb_096563_010 Hb_000093_160--Hb_096563_010 Hb_004310_150 Hb_004310_150 Hb_000093_160--Hb_004310_150 Hb_000120_790 Hb_000120_790 Hb_000093_160--Hb_000120_790 Hb_001258_090 Hb_001258_090 Hb_000093_160--Hb_001258_090 Hb_010068_040 Hb_010068_040 Hb_033153_070--Hb_010068_040 Hb_000334_270 Hb_000334_270 Hb_033153_070--Hb_000334_270 Hb_000649_070 Hb_000649_070 Hb_033153_070--Hb_000649_070 Hb_033720_010 Hb_033720_010 Hb_033153_070--Hb_033720_010 Hb_002175_030 Hb_002175_030 Hb_033153_070--Hb_002175_030 Hb_000959_270 Hb_000959_270 Hb_033153_070--Hb_000959_270 Hb_000174_110 Hb_000174_110 Hb_005618_160--Hb_000174_110 Hb_054865_100 Hb_054865_100 Hb_005618_160--Hb_054865_100 Hb_005618_160--Hb_011970_030 Hb_000462_140 Hb_000462_140 Hb_005618_160--Hb_000462_140 Hb_005618_160--Hb_003010_030 Hb_005618_160--Hb_002495_040 Hb_002739_050--Hb_003428_030 Hb_002253_100 Hb_002253_100 Hb_002739_050--Hb_002253_100 Hb_002739_050--Hb_000093_160 Hb_002739_050--Hb_005618_160 Hb_007672_060 Hb_007672_060 Hb_002739_050--Hb_007672_060 Hb_001586_040 Hb_001586_040 Hb_002739_050--Hb_001586_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.43035 7.84532 8.10566 7.83495 12.7198 16.7956
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.48274 16.2034 3.87061 3.08574 5.91771

CAGE analysis