Hb_004127_020

Information

Type -
Description -
Location Contig4127: 18888-20840
Sequence    

Annotation

kegg
ID pop:POPTR_0001s22400g
description POPTRDRAFT_1067754; RNA 3'-terminal phosphate cyclase-like family protein
nr
ID XP_011012763.1
description PREDICTED: probable RNA 3'-terminal phosphate cyclase-like protein isoform X1 [Populus euphratica]
swissprot
ID Q9C578
description Probable RNA 3'-terminal phosphate cyclase-like protein OS=Arabidopsis thaliana GN=At5g22100 PE=2 SV=1
trembl
ID B9GHM4
description RNA 3'-terminal phosphate cyclase-like family protein OS=Populus trichocarpa GN=POPTR_0001s22400g PE=4 SV=1
Gene Ontology
ID GO:0005730
description probable rna 3 -terminal phosphate cyclase-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40842: 6689-20849
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004127_020 0.0 - - PREDICTED: probable RNA 3'-terminal phosphate cyclase-like protein isoform X1 [Populus euphratica]
2 Hb_000479_090 0.0598617695 - - PREDICTED: zinc finger RNA-binding protein [Jatropha curcas]
3 Hb_004143_150 0.0643246297 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X6 [Jatropha curcas]
4 Hb_000265_050 0.0654254601 - - hypothetical protein CISIN_1g033530mg [Citrus sinensis]
5 Hb_004899_370 0.0658538423 - - hypothetical protein CICLE_v10009013mg [Citrus clementina]
6 Hb_002798_020 0.0662178375 - - PREDICTED: uncharacterized protein LOC105647735 [Jatropha curcas]
7 Hb_000840_180 0.0683094338 - - protein BOLA2 [Jatropha curcas]
8 Hb_000005_090 0.0730544972 - - hypothetical protein CICLE_v10029644mg [Citrus clementina]
9 Hb_000920_110 0.0743824432 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Jatropha curcas]
10 Hb_003540_240 0.0752009627 - - PREDICTED: ribosomal RNA-processing protein 17 [Jatropha curcas]
11 Hb_002110_200 0.0795881215 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X1 [Jatropha curcas]
12 Hb_002676_090 0.0800670795 - - PREDICTED: protein TIC 22-like, chloroplastic [Jatropha curcas]
13 Hb_023278_020 0.0801464358 - - Peroxin 3 isoform 1 [Theobroma cacao]
14 Hb_000169_040 0.0803120178 - - PREDICTED: stress response protein nst1-like [Jatropha curcas]
15 Hb_007576_170 0.0810656454 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000107_160 0.0840147871 - - PREDICTED: uncharacterized protein LOC105645584 [Jatropha curcas]
17 Hb_002056_050 0.0850663331 - - PREDICTED: uncharacterized protein LOC105130744 [Populus euphratica]
18 Hb_000384_100 0.085418201 - - hydrolase, putative [Ricinus communis]
19 Hb_006541_010 0.0855025368 - - PREDICTED: uncharacterized protein LOC105637261 isoform X1 [Jatropha curcas]
20 Hb_033153_060 0.0856944017 - - Transcription elongation factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_004127_020 Hb_004127_020 Hb_000479_090 Hb_000479_090 Hb_004127_020--Hb_000479_090 Hb_004143_150 Hb_004143_150 Hb_004127_020--Hb_004143_150 Hb_000265_050 Hb_000265_050 Hb_004127_020--Hb_000265_050 Hb_004899_370 Hb_004899_370 Hb_004127_020--Hb_004899_370 Hb_002798_020 Hb_002798_020 Hb_004127_020--Hb_002798_020 Hb_000840_180 Hb_000840_180 Hb_004127_020--Hb_000840_180 Hb_000384_100 Hb_000384_100 Hb_000479_090--Hb_000384_100 Hb_000059_370 Hb_000059_370 Hb_000479_090--Hb_000059_370 Hb_000920_110 Hb_000920_110 Hb_000479_090--Hb_000920_110 Hb_000676_180 Hb_000676_180 Hb_000479_090--Hb_000676_180 Hb_002686_020 Hb_002686_020 Hb_000479_090--Hb_002686_020 Hb_004143_150--Hb_004899_370 Hb_000001_060 Hb_000001_060 Hb_004143_150--Hb_000001_060 Hb_004143_150--Hb_000920_110 Hb_006615_240 Hb_006615_240 Hb_004143_150--Hb_006615_240 Hb_004102_110 Hb_004102_110 Hb_004143_150--Hb_004102_110 Hb_000265_050--Hb_002798_020 Hb_005063_050 Hb_005063_050 Hb_000265_050--Hb_005063_050 Hb_000136_170 Hb_000136_170 Hb_000265_050--Hb_000136_170 Hb_003893_050 Hb_003893_050 Hb_000265_050--Hb_003893_050 Hb_004459_040 Hb_004459_040 Hb_000265_050--Hb_004459_040 Hb_023278_020 Hb_023278_020 Hb_004899_370--Hb_023278_020 Hb_004899_370--Hb_000001_060 Hb_003151_040 Hb_003151_040 Hb_004899_370--Hb_003151_040 Hb_009615_070 Hb_009615_070 Hb_004899_370--Hb_009615_070 Hb_007065_010 Hb_007065_010 Hb_002798_020--Hb_007065_010 Hb_007576_170 Hb_007576_170 Hb_002798_020--Hb_007576_170 Hb_003226_100 Hb_003226_100 Hb_002798_020--Hb_003226_100 Hb_002056_050 Hb_002056_050 Hb_002798_020--Hb_002056_050 Hb_000169_040 Hb_000169_040 Hb_000840_180--Hb_000169_040 Hb_000840_180--Hb_002798_020 Hb_000840_180--Hb_004459_040 Hb_026053_020 Hb_026053_020 Hb_000840_180--Hb_026053_020 Hb_000996_140 Hb_000996_140 Hb_000840_180--Hb_000996_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.2958 7.18707 8.24805 13.5776 9.67701 13.7178
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.4063 36.3243 15.9765 8.89956 13.7715

CAGE analysis