Hb_004127_030

Information

Type -
Description -
Location Contig4127: 25300-32455
Sequence    

Annotation

kegg
ID pop:POPTR_0013s01400g
description POPTRDRAFT_806754; putative Rab geranylgeranyl transferase type II beta subunit family protein
nr
ID XP_002319501.2
description putative Rab geranylgeranyl transferase type II beta subunit family protein [Populus trichocarpa]
swissprot
ID P53611
description Geranylgeranyl transferase type-2 subunit beta OS=Homo sapiens GN=RABGGTB PE=1 SV=2
trembl
ID B9I7A9
description Putative Rab geranylgeranyl transferase type II beta subunit family protein OS=Populus trichocarpa GN=POPTR_0013s01400g PE=4 SV=2
Gene Ontology
ID GO:0004663
description geranylgeranyl transferase type-2 subunit beta-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40844: 25285-31589 , PASA_asmbl_40846: 30527-30774 , PASA_asmbl_40848: 29435-30812
cDNA
(Sanger)
(ID:Location)		 050_C22.ab1: 29435-30812

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004127_030 0.0 - - putative Rab geranylgeranyl transferase type II beta subunit family protein [Populus trichocarpa]
2 Hb_000862_030 0.0526420274 - - PREDICTED: phosphatidylinositol glycan anchor biosynthesis class U protein-like isoform X1 [Jatropha curcas]
3 Hb_000159_090 0.0791496399 - - hypothetical protein POPTR_0015s153201g, partial [Populus trichocarpa]
4 Hb_026198_070 0.0812965612 - - PREDICTED: uncharacterized membrane protein At4g09580 [Jatropha curcas]
5 Hb_011671_040 0.0814892076 - - PREDICTED: uncharacterized protein LOC105646469 isoform X2 [Jatropha curcas]
6 Hb_000270_490 0.0835538402 - - betaine aldehyde dehydrogenase 1 [Jatropha curcas]
7 Hb_001366_370 0.0851258103 - - PREDICTED: aarF domain-containing protein kinase 4 isoform X1 [Jatropha curcas]
8 Hb_168978_030 0.0859980361 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 8 [Jatropha curcas]
9 Hb_003376_330 0.0861453996 - - PREDICTED: gamma carbonic anhydrase 1, mitochondrial [Eucalyptus grandis]
10 Hb_000019_030 0.0879128234 - - PREDICTED: V-type proton ATPase subunit C [Gossypium raimondii]
11 Hb_002445_120 0.088013084 - - secretory carrier membrane protein, putative [Ricinus communis]
12 Hb_006588_170 0.0905307558 - - PREDICTED: OTU domain-containing protein At3g57810 [Jatropha curcas]
13 Hb_073973_100 0.0911037252 - - PREDICTED: uncharacterized protein LOC105638910 [Jatropha curcas]
14 Hb_002473_130 0.0935958533 - - PREDICTED: THO complex subunit 3 isoform X1 [Jatropha curcas]
15 Hb_000141_080 0.0944508605 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial isoform X1 [Brassica rapa]
16 Hb_000599_300 0.0952705908 - - PREDICTED: TBC1 domain family member 15-like [Jatropha curcas]
17 Hb_000640_170 0.0955885116 - - PREDICTED: uncharacterized protein LOC105642632 isoform X2 [Jatropha curcas]
18 Hb_000994_120 0.0957513166 - - unknown [Populus trichocarpa]
19 Hb_000468_060 0.0959380353 - - ku P70 DNA helicase, putative [Ricinus communis]
20 Hb_006153_070 0.0960381828 - - 3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_004127_030 Hb_004127_030 Hb_000862_030 Hb_000862_030 Hb_004127_030--Hb_000862_030 Hb_000159_090 Hb_000159_090 Hb_004127_030--Hb_000159_090 Hb_026198_070 Hb_026198_070 Hb_004127_030--Hb_026198_070 Hb_011671_040 Hb_011671_040 Hb_004127_030--Hb_011671_040 Hb_000270_490 Hb_000270_490 Hb_004127_030--Hb_000270_490 Hb_001366_370 Hb_001366_370 Hb_004127_030--Hb_001366_370 Hb_002235_170 Hb_002235_170 Hb_000862_030--Hb_002235_170 Hb_001492_020 Hb_001492_020 Hb_000862_030--Hb_001492_020 Hb_002213_070 Hb_002213_070 Hb_000862_030--Hb_002213_070 Hb_004689_050 Hb_004689_050 Hb_000862_030--Hb_004689_050 Hb_002675_070 Hb_002675_070 Hb_000862_030--Hb_002675_070 Hb_007638_030 Hb_007638_030 Hb_000159_090--Hb_007638_030 Hb_003683_020 Hb_003683_020 Hb_000159_090--Hb_003683_020 Hb_000140_280 Hb_000140_280 Hb_000159_090--Hb_000140_280 Hb_012498_010 Hb_012498_010 Hb_000159_090--Hb_012498_010 Hb_008970_030 Hb_008970_030 Hb_000159_090--Hb_008970_030 Hb_010964_040 Hb_010964_040 Hb_000159_090--Hb_010964_040 Hb_000441_200 Hb_000441_200 Hb_026198_070--Hb_000441_200 Hb_002110_190 Hb_002110_190 Hb_026198_070--Hb_002110_190 Hb_000254_090 Hb_000254_090 Hb_026198_070--Hb_000254_090 Hb_000640_170 Hb_000640_170 Hb_026198_070--Hb_000640_170 Hb_002044_150 Hb_002044_150 Hb_026198_070--Hb_002044_150 Hb_007479_040 Hb_007479_040 Hb_026198_070--Hb_007479_040 Hb_000025_470 Hb_000025_470 Hb_011671_040--Hb_000025_470 Hb_008748_040 Hb_008748_040 Hb_011671_040--Hb_008748_040 Hb_008120_010 Hb_008120_010 Hb_011671_040--Hb_008120_010 Hb_011671_040--Hb_000270_490 Hb_003688_130 Hb_003688_130 Hb_011671_040--Hb_003688_130 Hb_003376_330 Hb_003376_330 Hb_000270_490--Hb_003376_330 Hb_000120_060 Hb_000120_060 Hb_000270_490--Hb_000120_060 Hb_073973_100 Hb_073973_100 Hb_000270_490--Hb_073973_100 Hb_003693_070 Hb_003693_070 Hb_000270_490--Hb_003693_070 Hb_000270_490--Hb_026198_070 Hb_000200_020 Hb_000200_020 Hb_001366_370--Hb_000200_020 Hb_002053_140 Hb_002053_140 Hb_001366_370--Hb_002053_140 Hb_000783_010 Hb_000783_010 Hb_001366_370--Hb_000783_010 Hb_001427_160 Hb_001427_160 Hb_001366_370--Hb_001427_160 Hb_009787_030 Hb_009787_030 Hb_001366_370--Hb_009787_030 Hb_000510_300 Hb_000510_300 Hb_001366_370--Hb_000510_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.0052 17.2356 30.6422 49.5166 30.7982 58.4252
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
57.395 30.2098 35.5428 45.4566 28.8299

CAGE analysis