Hb_004128_030

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig4128: 31425-37184
Sequence    

Annotation

kegg
ID gmx:100797466
description transcription factor ASG4-like
nr
ID XP_012082262.1
description PREDICTED: protein REVEILLE 8-like isoform X1 [Jatropha curcas]
swissprot
ID Q8RWU3
description Protein REVEILLE 8 OS=Arabidopsis thaliana GN=RVE8 PE=2 SV=1
trembl
ID A0A067K1W9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16452 PE=4 SV=1
Gene Ontology
ID GO:0003677
description protein reveille 8-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40849: 31669-37122 , PASA_asmbl_40851: 34166-34269
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004128_030 0.0 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 8-like isoform X1 [Jatropha curcas]
2 Hb_002217_090 0.0791138615 - - PREDICTED: probable protein phosphatase 2C 13 [Jatropha curcas]
3 Hb_010661_010 0.0793487596 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX9H isoform X1 [Jatropha curcas]
4 Hb_002686_230 0.082727008 - - ubiquitin-protein ligase, putative [Ricinus communis]
5 Hb_001500_030 0.0847025798 - - PREDICTED: uncharacterized protein At2g33490 isoform X2 [Jatropha curcas]
6 Hb_010407_080 0.0966498623 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT35 isoform X1 [Jatropha curcas]
7 Hb_003747_210 0.0970663024 - - PREDICTED: uncharacterized protein LOC105630240 [Jatropha curcas]
8 Hb_003599_030 0.0980379468 - - PREDICTED: glucan endo-1,3-beta-glucosidase 4 isoform X3 [Jatropha curcas]
9 Hb_000912_100 0.0983042394 - - PREDICTED: CMP-sialic acid transporter 3-like isoform X2 [Elaeis guineensis]
10 Hb_001699_230 0.0988951026 - - PREDICTED: calcium-dependent protein kinase 28 [Jatropha curcas]
11 Hb_002915_060 0.0990438031 - - PREDICTED: serine/threonine-protein kinase CTR1-like [Jatropha curcas]
12 Hb_007839_020 0.0993213072 - - conserved hypothetical protein [Ricinus communis]
13 Hb_022425_060 0.0997396376 - - PREDICTED: protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein isoform X1 [Jatropha curcas]
14 Hb_000711_010 0.1001393089 transcription factor TF Family: Tify PREDICTED: protein TIFY 6B isoform X1 [Jatropha curcas]
15 Hb_000417_300 0.1010115186 - - PREDICTED: probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7 [Jatropha curcas]
16 Hb_000340_080 0.1049636747 - - PREDICTED: isoamylase 2, chloroplastic [Jatropha curcas]
17 Hb_002876_210 0.1057698663 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Jatropha curcas]
18 Hb_001673_060 0.1062080289 - - PREDICTED: uncharacterized protein LOC105635789 [Jatropha curcas]
19 Hb_001257_100 0.1074563332 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FB isoform X1 [Jatropha curcas]
20 Hb_002965_050 0.1119090432 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR2 [Jatropha curcas]

Gene co-expression network

sample Hb_004128_030 Hb_004128_030 Hb_002217_090 Hb_002217_090 Hb_004128_030--Hb_002217_090 Hb_010661_010 Hb_010661_010 Hb_004128_030--Hb_010661_010 Hb_002686_230 Hb_002686_230 Hb_004128_030--Hb_002686_230 Hb_001500_030 Hb_001500_030 Hb_004128_030--Hb_001500_030 Hb_010407_080 Hb_010407_080 Hb_004128_030--Hb_010407_080 Hb_003747_210 Hb_003747_210 Hb_004128_030--Hb_003747_210 Hb_002217_090--Hb_001500_030 Hb_000912_100 Hb_000912_100 Hb_002217_090--Hb_000912_100 Hb_002217_090--Hb_003747_210 Hb_000711_010 Hb_000711_010 Hb_002217_090--Hb_000711_010 Hb_002876_210 Hb_002876_210 Hb_002217_090--Hb_002876_210 Hb_010661_010--Hb_001500_030 Hb_127311_010 Hb_127311_010 Hb_010661_010--Hb_127311_010 Hb_000252_210 Hb_000252_210 Hb_010661_010--Hb_000252_210 Hb_010661_010--Hb_003747_210 Hb_001673_060 Hb_001673_060 Hb_010661_010--Hb_001673_060 Hb_002686_230--Hb_010407_080 Hb_009288_010 Hb_009288_010 Hb_002686_230--Hb_009288_010 Hb_009658_030 Hb_009658_030 Hb_002686_230--Hb_009658_030 Hb_033312_130 Hb_033312_130 Hb_002686_230--Hb_033312_130 Hb_001008_130 Hb_001008_130 Hb_002686_230--Hb_001008_130 Hb_022425_060 Hb_022425_060 Hb_002686_230--Hb_022425_060 Hb_001500_030--Hb_000912_100 Hb_001500_030--Hb_002876_210 Hb_001500_030--Hb_003747_210 Hb_007839_020 Hb_007839_020 Hb_010407_080--Hb_007839_020 Hb_010407_080--Hb_022425_060 Hb_001269_380 Hb_001269_380 Hb_010407_080--Hb_001269_380 Hb_001329_200 Hb_001329_200 Hb_010407_080--Hb_001329_200 Hb_010407_080--Hb_033312_130 Hb_000110_300 Hb_000110_300 Hb_003747_210--Hb_000110_300 Hb_002915_060 Hb_002915_060 Hb_003747_210--Hb_002915_060 Hb_007576_200 Hb_007576_200 Hb_003747_210--Hb_007576_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.78018 35.3441 15.2553 25.9814 6.71926 7.86687
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.3905 7.8178 9.28672 13.0525 18.8496

CAGE analysis