Hb_004128_060

Information

Type -
Description -
Location Contig4128: 62500-63783
Sequence    

Annotation

kegg
ID rcu:RCOM_0819870
description meiotic recombination protein spo11, putative (EC:5.99.1.3)
nr
ID XP_012082258.1
description PREDICTED: DNA topoisomerase 6 subunit A [Jatropha curcas]
swissprot
ID Q9LZ03
description DNA topoisomerase 6 subunit A OS=Arabidopsis thaliana GN=TOP6A PE=1 SV=1
trembl
ID A0A067K1W3
description DNA topoisomerase 6 subunit A OS=Jatropha curcas GN=TOP6A PE=3 SV=1
Gene Ontology
ID GO:0005634
description dna topoisomerase 6 subunit a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40854: 62261-63802 , PASA_asmbl_40856: 64486-67836
cDNA
(Sanger)
(ID:Location)		 025_C22.ab1: 63007-63802

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004128_060 0.0 - - PREDICTED: DNA topoisomerase 6 subunit A [Jatropha curcas]
2 Hb_000554_020 0.0848589573 - - PREDICTED: pentatricopeptide repeat-containing protein At2g02980-like [Jatropha curcas]
3 Hb_000406_220 0.0850947495 - - hypothetical protein POPTR_0005s04700g [Populus trichocarpa]
4 Hb_000032_290 0.0851824617 transcription factor TF Family: RWP-RK PREDICTED: protein NLP7-like [Jatropha curcas]
5 Hb_005357_030 0.0873487737 - - PREDICTED: pyruvate, phosphate dikinase regulatory protein 1, chloroplastic [Jatropha curcas]
6 Hb_181235_010 0.0880112608 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105645554 isoform X2 [Jatropha curcas]
7 Hb_006949_040 0.0900270924 - - protein phosphatase 2c, putative [Ricinus communis]
8 Hb_000768_040 0.0928122651 - - PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 2-like [Jatropha curcas]
9 Hb_000181_070 0.0935984825 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_002810_020 0.0937366453 - - PREDICTED: pentatricopeptide repeat-containing protein At1g25360 [Jatropha curcas]
11 Hb_000022_250 0.0940195989 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g15130 [Jatropha curcas]
12 Hb_004907_110 0.0956634242 - - PREDICTED: BTB/POZ and MATH domain-containing protein 3 isoform X1 [Jatropha curcas]
13 Hb_000805_020 0.0959365895 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
14 Hb_007532_030 0.0979188538 - - PREDICTED: F-box/kelch-repeat protein At1g30090 [Jatropha curcas]
15 Hb_011161_010 0.0987618724 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370 isoform X1 [Jatropha curcas]
16 Hb_004324_370 0.0990307665 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g49142 [Jatropha curcas]
17 Hb_005015_070 0.1000644497 - - PREDICTED: pentatricopeptide repeat-containing protein At4g39530 [Jatropha curcas]
18 Hb_000926_330 0.1002713131 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
19 Hb_000203_160 0.1004062357 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2-like [Jatropha curcas]
20 Hb_001226_160 0.1008886114 - - PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004128_060 Hb_004128_060 Hb_000554_020 Hb_000554_020 Hb_004128_060--Hb_000554_020 Hb_000406_220 Hb_000406_220 Hb_004128_060--Hb_000406_220 Hb_000032_290 Hb_000032_290 Hb_004128_060--Hb_000032_290 Hb_005357_030 Hb_005357_030 Hb_004128_060--Hb_005357_030 Hb_181235_010 Hb_181235_010 Hb_004128_060--Hb_181235_010 Hb_006949_040 Hb_006949_040 Hb_004128_060--Hb_006949_040 Hb_000554_020--Hb_000406_220 Hb_006332_020 Hb_006332_020 Hb_000554_020--Hb_006332_020 Hb_000754_060 Hb_000754_060 Hb_000554_020--Hb_000754_060 Hb_001671_020 Hb_001671_020 Hb_000554_020--Hb_001671_020 Hb_028872_140 Hb_028872_140 Hb_000554_020--Hb_028872_140 Hb_000554_020--Hb_000032_290 Hb_000406_220--Hb_000032_290 Hb_000406_220--Hb_181235_010 Hb_001789_090 Hb_001789_090 Hb_000406_220--Hb_001789_090 Hb_011161_010 Hb_011161_010 Hb_000406_220--Hb_011161_010 Hb_002810_020 Hb_002810_020 Hb_000406_220--Hb_002810_020 Hb_000245_130 Hb_000245_130 Hb_000032_290--Hb_000245_130 Hb_018838_030 Hb_018838_030 Hb_000032_290--Hb_018838_030 Hb_000032_290--Hb_181235_010 Hb_000032_290--Hb_006332_020 Hb_004223_280 Hb_004223_280 Hb_005357_030--Hb_004223_280 Hb_002685_170 Hb_002685_170 Hb_005357_030--Hb_002685_170 Hb_007590_050 Hb_007590_050 Hb_005357_030--Hb_007590_050 Hb_001138_050 Hb_001138_050 Hb_005357_030--Hb_001138_050 Hb_019253_020 Hb_019253_020 Hb_005357_030--Hb_019253_020 Hb_001226_160 Hb_001226_160 Hb_005357_030--Hb_001226_160 Hb_002154_030 Hb_002154_030 Hb_181235_010--Hb_002154_030 Hb_002477_030 Hb_002477_030 Hb_181235_010--Hb_002477_030 Hb_003777_330 Hb_003777_330 Hb_181235_010--Hb_003777_330 Hb_000062_240 Hb_000062_240 Hb_181235_010--Hb_000062_240 Hb_006949_050 Hb_006949_050 Hb_006949_040--Hb_006949_050 Hb_000193_290 Hb_000193_290 Hb_006949_040--Hb_000193_290 Hb_061802_020 Hb_061802_020 Hb_006949_040--Hb_061802_020 Hb_006949_040--Hb_000554_020 Hb_000030_150 Hb_000030_150 Hb_006949_040--Hb_000030_150 Hb_006949_040--Hb_001671_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
71.3315 93.6388 16.1399 38.566 69.3645 108.652
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
80.6725 121.151 111.522 45.787 32.6014

CAGE analysis