Hb_004128_070

Information

Type -
Description -
Location Contig4128: 64426-67933
Sequence    

Annotation

kegg
ID cic:CICLE_v10013683mg
description hypothetical protein
nr
ID XP_012082257.1
description PREDICTED: thioredoxin-like protein AAED1, chloroplastic [Jatropha curcas]
swissprot
ID Q9ZUU2
description Thioredoxin-like protein AAED1, chloroplastic OS=Arabidopsis thaliana GN=At2g37240 PE=2 SV=2
trembl
ID V4ST64
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013683mg PE=4 SV=1
Gene Ontology
ID GO:0010264
description thioredoxin-like protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40856: 64486-67836 , PASA_asmbl_40857: 65747-65932
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004128_070 0.0 - - PREDICTED: thioredoxin-like protein AAED1, chloroplastic [Jatropha curcas]
2 Hb_000032_370 0.1157975091 - - PREDICTED: nucleoside diphosphate kinase III, chloroplastic/mitochondrial-like [Citrus sinensis]
3 Hb_001399_010 0.118360298 - - ATP binding protein, putative [Ricinus communis]
4 Hb_005846_030 0.1191309398 - - PREDICTED: 50S ribosomal protein L29, chloroplastic [Jatropha curcas]
5 Hb_010422_070 0.1266929705 - - PREDICTED: UPF0483 protein CBG03338-like [Jatropha curcas]
6 Hb_065525_120 0.1284507155 - - dtdp-glucose 4-6-dehydratase, putative [Ricinus communis]
7 Hb_002374_300 0.1308176659 - - hypothetical protein JCGZ_12140 [Jatropha curcas]
8 Hb_004317_030 0.1318205129 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7 [Jatropha curcas]
9 Hb_000510_030 0.1324454687 - - Winged-helix DNA-binding transcription factor family protein [Theobroma cacao]
10 Hb_019762_050 0.1340085352 transcription factor TF Family: CSD PREDICTED: glycine-rich protein 2-like [Jatropha curcas]
11 Hb_004672_030 0.1374764585 - - proline oxidase [Manihot esculenta]
12 Hb_005725_220 0.1390596079 - - PREDICTED: uncharacterized protein LOC105630808 [Jatropha curcas]
13 Hb_000167_050 0.1452228943 - - PREDICTED: uncharacterized protein LOC105641106 [Jatropha curcas]
14 Hb_002045_060 0.1459477216 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Jatropha curcas]
15 Hb_001124_180 0.1460851654 - - PREDICTED: uncharacterized protein LOC105171432 [Sesamum indicum]
16 Hb_000365_370 0.1465313136 - - conserved hypothetical protein [Ricinus communis]
17 Hb_014834_130 0.1467044537 - - PREDICTED: formyltetrahydrofolate deformylase 1, mitochondrial-like [Jatropha curcas]
18 Hb_000525_050 0.1471348142 - - conserved hypothetical protein [Ricinus communis]
19 Hb_027298_010 0.1495353374 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000377_150 0.1501604983 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]

Gene co-expression network

sample Hb_004128_070 Hb_004128_070 Hb_000032_370 Hb_000032_370 Hb_004128_070--Hb_000032_370 Hb_001399_010 Hb_001399_010 Hb_004128_070--Hb_001399_010 Hb_005846_030 Hb_005846_030 Hb_004128_070--Hb_005846_030 Hb_010422_070 Hb_010422_070 Hb_004128_070--Hb_010422_070 Hb_065525_120 Hb_065525_120 Hb_004128_070--Hb_065525_120 Hb_002374_300 Hb_002374_300 Hb_004128_070--Hb_002374_300 Hb_004317_030 Hb_004317_030 Hb_000032_370--Hb_004317_030 Hb_000392_550 Hb_000392_550 Hb_000032_370--Hb_000392_550 Hb_000032_370--Hb_065525_120 Hb_002045_060 Hb_002045_060 Hb_000032_370--Hb_002045_060 Hb_000510_030 Hb_000510_030 Hb_000032_370--Hb_000510_030 Hb_000428_060 Hb_000428_060 Hb_000032_370--Hb_000428_060 Hb_001138_060 Hb_001138_060 Hb_001399_010--Hb_001138_060 Hb_001277_100 Hb_001277_100 Hb_001399_010--Hb_001277_100 Hb_001863_020 Hb_001863_020 Hb_001399_010--Hb_001863_020 Hb_005725_220 Hb_005725_220 Hb_001399_010--Hb_005725_220 Hb_000167_050 Hb_000167_050 Hb_001399_010--Hb_000167_050 Hb_007632_170 Hb_007632_170 Hb_005846_030--Hb_007632_170 Hb_005846_030--Hb_005725_220 Hb_001712_020 Hb_001712_020 Hb_005846_030--Hb_001712_020 Hb_000164_140 Hb_000164_140 Hb_005846_030--Hb_000164_140 Hb_000638_160 Hb_000638_160 Hb_005846_030--Hb_000638_160 Hb_005846_030--Hb_000167_050 Hb_005167_020 Hb_005167_020 Hb_010422_070--Hb_005167_020 Hb_010422_070--Hb_004317_030 Hb_010422_070--Hb_000032_370 Hb_010422_070--Hb_000510_030 Hb_010422_070--Hb_002045_060 Hb_027298_010 Hb_027298_010 Hb_065525_120--Hb_027298_010 Hb_009780_050 Hb_009780_050 Hb_065525_120--Hb_009780_050 Hb_154038_020 Hb_154038_020 Hb_065525_120--Hb_154038_020 Hb_001671_030 Hb_001671_030 Hb_065525_120--Hb_001671_030 Hb_007441_080 Hb_007441_080 Hb_065525_120--Hb_007441_080 Hb_001124_180 Hb_001124_180 Hb_002374_300--Hb_001124_180 Hb_000627_300 Hb_000627_300 Hb_002374_300--Hb_000627_300 Hb_000176_010 Hb_000176_010 Hb_002374_300--Hb_000176_010 Hb_005489_090 Hb_005489_090 Hb_002374_300--Hb_005489_090 Hb_002374_300--Hb_009780_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.91734 5.24212 31.9437 28.7885 5.23927 4.75983
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.0993 38.4916 38.3497 15.2873 65.3429

CAGE analysis