Hb_004128_080

Information

Type transcription factor
Description TF Family: Orphans
Location Contig4128: 71028-79236
Sequence    

Annotation

kegg
ID rcu:RCOM_0819890
description sensory transduction histidine kinase, putative
nr
ID XP_012082256.1
description PREDICTED: two-component response regulator-like APRR7 [Jatropha curcas]
swissprot
ID Q93WK5
description Two-component response regulator-like APRR7 OS=Arabidopsis thaliana GN=APRR7 PE=1 SV=1
trembl
ID A0A067JYT7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16446 PE=4 SV=1
Gene Ontology
ID GO:0005622
description two-component response regulator-like aprr7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40858: 70662-71436 , PASA_asmbl_40859: 71608-79041
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004128_080 0.0 transcription factor TF Family: Orphans PREDICTED: two-component response regulator-like APRR7 [Jatropha curcas]
2 Hb_001975_020 0.0766403016 - - PREDICTED: uncharacterized protein LOC105637186 [Jatropha curcas]
3 Hb_025477_060 0.0775953661 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
4 Hb_000327_310 0.0787508971 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Jatropha curcas]
5 Hb_046615_020 0.0800295884 - - PREDICTED: uncharacterized protein LOC105649409 [Jatropha curcas]
6 Hb_004096_020 0.0804820256 - - PREDICTED: KH domain-containing protein At4g18375-like, partial [Fragaria vesca subsp. vesca]
7 Hb_033594_020 0.0882843419 - - PREDICTED: ruvB-like 2 [Jatropha curcas]
8 Hb_000291_120 0.0891820784 transcription factor TF Family: ARF PREDICTED: auxin response factor 17 [Jatropha curcas]
9 Hb_000230_370 0.0921947554 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1 [Jatropha curcas]
10 Hb_000116_280 0.0967944951 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
11 Hb_027073_060 0.0969095352 - - PREDICTED: digalactosyldiacylglycerol synthase 1, chloroplastic [Jatropha curcas]
12 Hb_000096_180 0.1007431463 - - PREDICTED: pentatricopeptide repeat-containing protein At5g67570, chloroplastic-like isoform X1 [Jatropha curcas]
13 Hb_003216_110 0.1010712268 - - PREDICTED: vacuolar protein-sorting-associated protein 11 homolog [Jatropha curcas]
14 Hb_003656_160 0.1018829202 transcription factor TF Family: Alfin-like hypothetical protein B456_013G226400 [Gossypium raimondii]
15 Hb_000244_240 0.1024012567 - - ATP binding protein, putative [Ricinus communis]
16 Hb_002043_170 0.1025116972 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
17 Hb_005399_020 0.1046862317 - - hypothetical protein CISIN_1g022820mg [Citrus sinensis]
18 Hb_000003_790 0.1051995045 - - PREDICTED: nuclear poly(A) polymerase 4-like [Jatropha curcas]
19 Hb_000357_080 0.1055744919 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic [Jatropha curcas]
20 Hb_080147_030 0.1070750595 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_004128_080 Hb_004128_080 Hb_001975_020 Hb_001975_020 Hb_004128_080--Hb_001975_020 Hb_025477_060 Hb_025477_060 Hb_004128_080--Hb_025477_060 Hb_000327_310 Hb_000327_310 Hb_004128_080--Hb_000327_310 Hb_046615_020 Hb_046615_020 Hb_004128_080--Hb_046615_020 Hb_004096_020 Hb_004096_020 Hb_004128_080--Hb_004096_020 Hb_033594_020 Hb_033594_020 Hb_004128_080--Hb_033594_020 Hb_001975_020--Hb_000327_310 Hb_001975_020--Hb_046615_020 Hb_031754_010 Hb_031754_010 Hb_001975_020--Hb_031754_010 Hb_005295_040 Hb_005295_040 Hb_001975_020--Hb_005295_040 Hb_000116_280 Hb_000116_280 Hb_001975_020--Hb_000116_280 Hb_003018_160 Hb_003018_160 Hb_001975_020--Hb_003018_160 Hb_000002_440 Hb_000002_440 Hb_025477_060--Hb_000002_440 Hb_147737_010 Hb_147737_010 Hb_025477_060--Hb_147737_010 Hb_000096_180 Hb_000096_180 Hb_025477_060--Hb_000096_180 Hb_000046_450 Hb_000046_450 Hb_025477_060--Hb_000046_450 Hb_025477_060--Hb_046615_020 Hb_025477_060--Hb_001975_020 Hb_004724_360 Hb_004724_360 Hb_000327_310--Hb_004724_360 Hb_073171_080 Hb_073171_080 Hb_000327_310--Hb_073171_080 Hb_000230_370 Hb_000230_370 Hb_000327_310--Hb_000230_370 Hb_000327_310--Hb_046615_020 Hb_001366_040 Hb_001366_040 Hb_000327_310--Hb_001366_040 Hb_002043_170 Hb_002043_170 Hb_046615_020--Hb_002043_170 Hb_046615_020--Hb_000230_370 Hb_046615_020--Hb_031754_010 Hb_046615_020--Hb_004096_020 Hb_000531_090 Hb_000531_090 Hb_046615_020--Hb_000531_090 Hb_001871_040 Hb_001871_040 Hb_004096_020--Hb_001871_040 Hb_003406_040 Hb_003406_040 Hb_004096_020--Hb_003406_040 Hb_123777_030 Hb_123777_030 Hb_004096_020--Hb_123777_030 Hb_000195_020 Hb_000195_020 Hb_004096_020--Hb_000195_020 Hb_000357_080 Hb_000357_080 Hb_004096_020--Hb_000357_080 Hb_002675_040 Hb_002675_040 Hb_033594_020--Hb_002675_040 Hb_033594_020--Hb_046615_020 Hb_000343_210 Hb_000343_210 Hb_033594_020--Hb_000343_210 Hb_007885_070 Hb_007885_070 Hb_033594_020--Hb_007885_070 Hb_003656_160 Hb_003656_160 Hb_033594_020--Hb_003656_160 Hb_017895_020 Hb_017895_020 Hb_033594_020--Hb_017895_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
142.438 72.941 31.0234 16.3241 136.368 149.269
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
58.1736 19.7176 60.9372 20.0546 37.4365

CAGE analysis