Hb_004128_120

Information

Type -
Description -
Location Contig4128: 106485-110074
Sequence    

Annotation

kegg
ID -
description -
nr
ID EAZ26494.1
description hypothetical protein OsJ_10386 [Oryza sativa Japonica Group]
swissprot
ID -
description -
trembl
ID A0A0D3FH09
description Uncharacterized protein OS=Oryza barthii PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 038_P09r.ab1: 110865-112608

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004128_120 0.0 - - hypothetical protein OsJ_10386 [Oryza sativa Japonica Group]
2 Hb_000028_640 0.3034122926 - - Auxin efflux carrier component, putative [Ricinus communis]
3 Hb_185326_010 0.3081320294 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002637_020 0.3113433353 - - -
5 Hb_027998_030 0.3123131252 - - laccase, putative [Ricinus communis]
6 Hb_009246_010 0.3225276242 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
7 Hb_000668_010 0.3230260205 - - PREDICTED: probable beta-D-xylosidase 7 [Jatropha curcas]
8 Hb_095471_010 0.3243836553 - - PREDICTED: putative sodium-coupled neutral amino acid transporter 7 [Jatropha curcas]
9 Hb_007007_010 0.3251395481 - - -
10 Hb_000258_020 0.3297733925 - - PREDICTED: RING-H2 finger protein ATL74 [Jatropha curcas]
11 Hb_000879_050 0.3323717224 - - PREDICTED: uncharacterized protein LOC105107600 [Populus euphratica]
12 Hb_019936_010 0.3393243769 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 10 [Jatropha curcas]
13 Hb_000559_050 0.3397983545 - - hypothetical protein JCGZ_20429 [Jatropha curcas]
14 Hb_020499_010 0.3410014338 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
15 Hb_012146_040 0.3434537291 - - PREDICTED: amino-acid permease BAT1 homolog [Jatropha curcas]
16 Hb_073212_010 0.3435325965 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
17 Hb_002234_220 0.3441140019 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1 [Jatropha curcas]
18 Hb_004007_150 0.3451187945 transcription factor TF Family: TAZ PREDICTED: BTB/POZ and TAZ domain-containing protein 4 [Jatropha curcas]
19 Hb_002124_020 0.3470589077 transcription factor TF Family: bHLH lMYC3 [Hevea brasiliensis]
20 Hb_000329_050 0.3483999322 - - -

Gene co-expression network

sample Hb_004128_120 Hb_004128_120 Hb_000028_640 Hb_000028_640 Hb_004128_120--Hb_000028_640 Hb_185326_010 Hb_185326_010 Hb_004128_120--Hb_185326_010 Hb_002637_020 Hb_002637_020 Hb_004128_120--Hb_002637_020 Hb_027998_030 Hb_027998_030 Hb_004128_120--Hb_027998_030 Hb_009246_010 Hb_009246_010 Hb_004128_120--Hb_009246_010 Hb_000668_010 Hb_000668_010 Hb_004128_120--Hb_000668_010 Hb_009913_020 Hb_009913_020 Hb_000028_640--Hb_009913_020 Hb_000258_020 Hb_000258_020 Hb_000028_640--Hb_000258_020 Hb_005460_030 Hb_005460_030 Hb_000028_640--Hb_005460_030 Hb_002217_130 Hb_002217_130 Hb_000028_640--Hb_002217_130 Hb_000161_100 Hb_000161_100 Hb_000028_640--Hb_000161_100 Hb_001019_120 Hb_001019_120 Hb_000028_640--Hb_001019_120 Hb_001251_030 Hb_001251_030 Hb_185326_010--Hb_001251_030 Hb_005800_040 Hb_005800_040 Hb_185326_010--Hb_005800_040 Hb_103452_020 Hb_103452_020 Hb_185326_010--Hb_103452_020 Hb_171108_010 Hb_171108_010 Hb_185326_010--Hb_171108_010 Hb_013394_010 Hb_013394_010 Hb_185326_010--Hb_013394_010 Hb_000078_170 Hb_000078_170 Hb_002637_020--Hb_000078_170 Hb_000085_030 Hb_000085_030 Hb_002637_020--Hb_000085_030 Hb_002311_230 Hb_002311_230 Hb_002637_020--Hb_002311_230 Hb_000330_080 Hb_000330_080 Hb_002637_020--Hb_000330_080 Hb_000140_430 Hb_000140_430 Hb_002637_020--Hb_000140_430 Hb_001773_010 Hb_001773_010 Hb_002637_020--Hb_001773_010 Hb_004307_040 Hb_004307_040 Hb_027998_030--Hb_004307_040 Hb_000175_530 Hb_000175_530 Hb_027998_030--Hb_000175_530 Hb_007634_020 Hb_007634_020 Hb_027998_030--Hb_007634_020 Hb_000580_060 Hb_000580_060 Hb_027998_030--Hb_000580_060 Hb_000559_050 Hb_000559_050 Hb_027998_030--Hb_000559_050 Hb_001892_160 Hb_001892_160 Hb_027998_030--Hb_001892_160 Hb_010589_140 Hb_010589_140 Hb_009246_010--Hb_010589_140 Hb_002639_060 Hb_002639_060 Hb_009246_010--Hb_002639_060 Hb_150528_010 Hb_150528_010 Hb_009246_010--Hb_150528_010 Hb_033594_130 Hb_033594_130 Hb_009246_010--Hb_033594_130 Hb_002025_200 Hb_002025_200 Hb_009246_010--Hb_002025_200 Hb_000062_150 Hb_000062_150 Hb_009246_010--Hb_000062_150 Hb_019936_010 Hb_019936_010 Hb_000668_010--Hb_019936_010 Hb_017417_010 Hb_017417_010 Hb_000668_010--Hb_017417_010 Hb_000188_190 Hb_000188_190 Hb_000668_010--Hb_000188_190 Hb_003788_040 Hb_003788_040 Hb_000668_010--Hb_003788_040 Hb_000544_040 Hb_000544_040 Hb_000668_010--Hb_000544_040 Hb_004032_460 Hb_004032_460 Hb_000668_010--Hb_004032_460
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.425354 0 0 0.0349901 0.248435 0.0939712
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0641119 0 0.0521841 0.126709

CAGE analysis