Hb_004128_180

Information

Type -
Description -
Location Contig4128: 143211-145187
Sequence    

Annotation

kegg
ID rcu:RCOM_0820210
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002525211.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q9ZUT5
description Pentatricopeptide repeat-containing protein At2g37310 OS=Arabidopsis thaliana GN=PCMP-E49 PE=2 SV=1
trembl
ID B9SGU2
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0820210 PE=4 SV=1
Gene Ontology
ID GO:0008270
description pentatricopeptide repeat-containing protein at2g37310

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40874: 144280-144411
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004128_180 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_000236_140 0.0772242414 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1-like [Jatropha curcas]
3 Hb_000997_400 0.0807716693 - - PREDICTED: pentatricopeptide repeat-containing protein At1g50270 [Jatropha curcas]
4 Hb_000019_060 0.0911061099 - - PREDICTED: pentatricopeptide repeat-containing protein At3g26782, mitochondrial [Jatropha curcas]
5 Hb_000059_220 0.0969002839 - - PREDICTED: CBL-interacting protein kinase 2 [Jatropha curcas]
6 Hb_027472_170 0.0981379151 - - hypothetical protein POPTR_0007s08080g [Populus trichocarpa]
7 Hb_000297_200 0.0984760008 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33760-like [Vitis vinifera]
8 Hb_000482_010 0.1019415952 - - PREDICTED: probable ADP,ATP carrier protein At5g56450 [Jatropha curcas]
9 Hb_007075_050 0.1020182301 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_000019_130 0.1029915811 - - PREDICTED: putative pentatricopeptide repeat-containing protein At2g01510 [Jatropha curcas]
11 Hb_003018_190 0.1042581552 - - PREDICTED: pentatricopeptide repeat-containing protein At4g31070, mitochondrial [Jatropha curcas]
12 Hb_000307_030 0.1043551567 - - PREDICTED: pentatricopeptide repeat-containing protein At5g40410, mitochondrial [Jatropha curcas]
13 Hb_168319_030 0.1044441149 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
14 Hb_119600_040 0.1055286111 - - hypothetical protein JCGZ_08045 [Jatropha curcas]
15 Hb_004410_100 0.1063615496 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 21 [Jatropha curcas]
16 Hb_011030_020 0.1081186446 - - PREDICTED: pentatricopeptide repeat-containing protein At2g21090 [Jatropha curcas]
17 Hb_000377_060 0.1082525935 - - ARF GTPase activator, putative [Ricinus communis]
18 Hb_005686_030 0.108452549 - - PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial-like [Jatropha curcas]
19 Hb_019654_090 0.1094947488 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33680 [Jatropha curcas]
20 Hb_000935_050 0.1126792682 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49710 [Jatropha curcas]

Gene co-expression network

sample Hb_004128_180 Hb_004128_180 Hb_000236_140 Hb_000236_140 Hb_004128_180--Hb_000236_140 Hb_000997_400 Hb_000997_400 Hb_004128_180--Hb_000997_400 Hb_000019_060 Hb_000019_060 Hb_004128_180--Hb_000019_060 Hb_000059_220 Hb_000059_220 Hb_004128_180--Hb_000059_220 Hb_027472_170 Hb_027472_170 Hb_004128_180--Hb_027472_170 Hb_000297_200 Hb_000297_200 Hb_004128_180--Hb_000297_200 Hb_003687_100 Hb_003687_100 Hb_000236_140--Hb_003687_100 Hb_007416_270 Hb_007416_270 Hb_000236_140--Hb_007416_270 Hb_000479_130 Hb_000479_130 Hb_000236_140--Hb_000479_130 Hb_007075_050 Hb_007075_050 Hb_000236_140--Hb_007075_050 Hb_000172_560 Hb_000172_560 Hb_000236_140--Hb_000172_560 Hb_000997_400--Hb_000297_200 Hb_000997_400--Hb_000059_220 Hb_003018_190 Hb_003018_190 Hb_000997_400--Hb_003018_190 Hb_000482_010 Hb_000482_010 Hb_000997_400--Hb_000482_010 Hb_000457_150 Hb_000457_150 Hb_000997_400--Hb_000457_150 Hb_010710_040 Hb_010710_040 Hb_000997_400--Hb_010710_040 Hb_168319_030 Hb_168319_030 Hb_000019_060--Hb_168319_030 Hb_000019_060--Hb_007075_050 Hb_000366_090 Hb_000366_090 Hb_000019_060--Hb_000366_090 Hb_019654_090 Hb_019654_090 Hb_000019_060--Hb_019654_090 Hb_011030_020 Hb_011030_020 Hb_000019_060--Hb_011030_020 Hb_006501_040 Hb_006501_040 Hb_000059_220--Hb_006501_040 Hb_000179_210 Hb_000179_210 Hb_000059_220--Hb_000179_210 Hb_178968_110 Hb_178968_110 Hb_000059_220--Hb_178968_110 Hb_000614_230 Hb_000614_230 Hb_000059_220--Hb_000614_230 Hb_000059_220--Hb_000297_200 Hb_000019_130 Hb_000019_130 Hb_027472_170--Hb_000019_130 Hb_000935_050 Hb_000935_050 Hb_027472_170--Hb_000935_050 Hb_000307_030 Hb_000307_030 Hb_027472_170--Hb_000307_030 Hb_000007_150 Hb_000007_150 Hb_027472_170--Hb_000007_150 Hb_027472_170--Hb_168319_030 Hb_005686_030 Hb_005686_030 Hb_027472_170--Hb_005686_030 Hb_000297_200--Hb_000457_150 Hb_029584_130 Hb_029584_130 Hb_000297_200--Hb_029584_130 Hb_000297_200--Hb_000935_050 Hb_000297_200--Hb_000007_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.5812 0.975625 0.426457 0.834026 1.22183 1.55127
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.41732 2.734 5.21699 0.772928 0.531995

CAGE analysis