Hb_004128_190

Information

Type -
Description -
Location Contig4128: 145323-147315
Sequence    

Annotation

kegg
ID rcu:RCOM_0820220
description hypothetical protein
nr
ID XP_012082235.1
description PREDICTED: dirigent protein 17-like [Jatropha curcas]
swissprot
ID F4J4N3
description Dirigent protein 17 OS=Arabidopsis thaliana GN=DIR17 PE=2 SV=1
trembl
ID A0A067KB41
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16433 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40875: 144462-144873 , PASA_asmbl_40876: 145367-147520 , PASA_asmbl_40877: 145950-146211
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004128_190 0.0 - - PREDICTED: dirigent protein 17-like [Jatropha curcas]
2 Hb_002078_150 0.0482568262 - - protein with unknown function [Ricinus communis]
3 Hb_003847_080 0.0573142989 - - PREDICTED: uncharacterized protein LOC105647792 isoform X3 [Jatropha curcas]
4 Hb_000245_130 0.0636196628 - - PREDICTED: nuclear pore complex protein NUP35 [Jatropha curcas]
5 Hb_000103_090 0.0646367956 - - PREDICTED: protein RDM1 [Jatropha curcas]
6 Hb_012305_050 0.0659403861 - - unnamed protein product [Coffea canephora]
7 Hb_000024_080 0.0685504784 - - PREDICTED: probable complex I intermediate-associated protein 30 isoform X2 [Jatropha curcas]
8 Hb_002477_330 0.0702361547 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1-like [Jatropha curcas]
9 Hb_000363_500 0.0713247873 - - PREDICTED: EH domain-containing protein 1 isoform X2 [Jatropha curcas]
10 Hb_002374_160 0.0717782357 - - PREDICTED: N-glycosylase/DNA lyase OGG1 isoform X1 [Jatropha curcas]
11 Hb_000045_090 0.0747491277 - - PREDICTED: syntaxin-31 [Jatropha curcas]
12 Hb_010504_020 0.075443231 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
13 Hb_004545_060 0.0756767238 - - PREDICTED: trafficking protein particle complex subunit 6B [Jatropha curcas]
14 Hb_000398_180 0.0760389613 - - hypothetical protein PRUPE_ppa009665mg [Prunus persica]
15 Hb_012008_020 0.0761196836 - - PREDICTED: uncharacterized protein LOC104233229 [Nicotiana sylvestris]
16 Hb_010180_010 0.076615724 - - PREDICTED: uncharacterized protein LOC105631104 [Jatropha curcas]
17 Hb_010180_020 0.0766959419 - - hypothetical protein glysoja_030394 [Glycine soja]
18 Hb_000103_560 0.0784410022 - - ADP-ribosylation factor, putative [Ricinus communis]
19 Hb_141131_010 0.0794090276 - - Diphthamide biosynthesis protein, putative [Ricinus communis]
20 Hb_033834_040 0.079652819 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004128_190 Hb_004128_190 Hb_002078_150 Hb_002078_150 Hb_004128_190--Hb_002078_150 Hb_003847_080 Hb_003847_080 Hb_004128_190--Hb_003847_080 Hb_000245_130 Hb_000245_130 Hb_004128_190--Hb_000245_130 Hb_000103_090 Hb_000103_090 Hb_004128_190--Hb_000103_090 Hb_012305_050 Hb_012305_050 Hb_004128_190--Hb_012305_050 Hb_000024_080 Hb_000024_080 Hb_004128_190--Hb_000024_080 Hb_000103_560 Hb_000103_560 Hb_002078_150--Hb_000103_560 Hb_000398_180 Hb_000398_180 Hb_002078_150--Hb_000398_180 Hb_002078_150--Hb_003847_080 Hb_001377_290 Hb_001377_290 Hb_002078_150--Hb_001377_290 Hb_004545_060 Hb_004545_060 Hb_002078_150--Hb_004545_060 Hb_003847_080--Hb_012305_050 Hb_185830_020 Hb_185830_020 Hb_003847_080--Hb_185830_020 Hb_001124_210 Hb_001124_210 Hb_003847_080--Hb_001124_210 Hb_000363_500 Hb_000363_500 Hb_003847_080--Hb_000363_500 Hb_000032_290 Hb_000032_290 Hb_000245_130--Hb_000032_290 Hb_000245_130--Hb_003847_080 Hb_005333_070 Hb_005333_070 Hb_000245_130--Hb_005333_070 Hb_002374_160 Hb_002374_160 Hb_000245_130--Hb_002374_160 Hb_000245_130--Hb_002078_150 Hb_002890_140 Hb_002890_140 Hb_000103_090--Hb_002890_140 Hb_033834_040 Hb_033834_040 Hb_000103_090--Hb_033834_040 Hb_032717_080 Hb_032717_080 Hb_000103_090--Hb_032717_080 Hb_002477_330 Hb_002477_330 Hb_000103_090--Hb_002477_330 Hb_000529_190 Hb_000529_190 Hb_000103_090--Hb_000529_190 Hb_022250_130 Hb_022250_130 Hb_012305_050--Hb_022250_130 Hb_012305_050--Hb_000245_130 Hb_012305_050--Hb_185830_020 Hb_000347_200 Hb_000347_200 Hb_012305_050--Hb_000347_200 Hb_000087_020 Hb_000087_020 Hb_000024_080--Hb_000087_020 Hb_004032_100 Hb_004032_100 Hb_000024_080--Hb_004032_100 Hb_010180_020 Hb_010180_020 Hb_000024_080--Hb_010180_020 Hb_000676_290 Hb_000676_290 Hb_000024_080--Hb_000676_290 Hb_005398_030 Hb_005398_030 Hb_000024_080--Hb_005398_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
37.6277 15.5793 10.4747 27.4907 35.3366 65.4683
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
50.2938 57.7492 36.5578 23.7612 14.3325

CAGE analysis