Hb_004129_010

Information

Type -
Description -
Location Contig4129: 7621-23757
Sequence    

Annotation

kegg
ID rcu:RCOM_0323510
description aspartate aminotransferase, putative (EC:2.6.1.1)
nr
ID XP_002530202.1
description aspartate aminotransferase, putative [Ricinus communis]
swissprot
ID P46643
description Aspartate aminotransferase, mitochondrial OS=Arabidopsis thaliana GN=ASP1 PE=1 SV=1
trembl
ID B9SW33
description Aspartate aminotransferase OS=Ricinus communis GN=RCOM_0323510 PE=3 SV=1
Gene Ontology
ID GO:0004069
description aspartate mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40882: 9735-9905
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004129_010 0.0 - - aspartate aminotransferase, putative [Ricinus communis]
2 Hb_005588_120 0.0749372905 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001754_050 0.0775152935 - - protein arginine n-methyltransferase, putative [Ricinus communis]
4 Hb_007229_050 0.083217975 - - PREDICTED: palmitoyl-protein thioesterase 1 isoform X1 [Jatropha curcas]
5 Hb_000256_160 0.0881178143 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 3-like isoform X1 [Glycine max]
6 Hb_000157_140 0.0963874933 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
7 Hb_003030_010 0.0968065736 - - PREDICTED: random slug protein 5-like [Jatropha curcas]
8 Hb_000340_220 0.1085800493 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001235_130 0.1090761356 - - -
10 Hb_000057_130 0.1094747444 - - PREDICTED: pyridoxal 5'-phosphate synthase-like subunit PDX1.2 [Jatropha curcas]
11 Hb_000094_150 0.1113175728 - - -
12 Hb_001124_140 0.1113268429 - - PREDICTED: inactive beta-amylase 9 [Jatropha curcas]
13 Hb_143766_080 0.114279569 - - PREDICTED: uncharacterized protein LOC105637797 isoform X1 [Jatropha curcas]
14 Hb_000622_060 0.1148975884 - - PREDICTED: uncharacterized protein At5g05190-like isoform X1 [Jatropha curcas]
15 Hb_002391_320 0.1152588355 - - PREDICTED: phospholipase D delta-like [Jatropha curcas]
16 Hb_000416_060 0.1157048029 - - PREDICTED: uncharacterized protein LOC105649718 [Jatropha curcas]
17 Hb_000115_360 0.1169688306 - - PREDICTED: probable protein phosphatase 2C 15 isoform X3 [Jatropha curcas]
18 Hb_000800_010 0.1172448236 - - PREDICTED: glycosyltransferase family protein 64 protein C5 [Jatropha curcas]
19 Hb_009193_010 0.1176736249 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Jatropha curcas]
20 Hb_132840_030 0.1201207086 transcription factor TF Family: MYB-related lhy1 [Populus tremula]

Gene co-expression network

sample Hb_004129_010 Hb_004129_010 Hb_005588_120 Hb_005588_120 Hb_004129_010--Hb_005588_120 Hb_001754_050 Hb_001754_050 Hb_004129_010--Hb_001754_050 Hb_007229_050 Hb_007229_050 Hb_004129_010--Hb_007229_050 Hb_000256_160 Hb_000256_160 Hb_004129_010--Hb_000256_160 Hb_000157_140 Hb_000157_140 Hb_004129_010--Hb_000157_140 Hb_003030_010 Hb_003030_010 Hb_004129_010--Hb_003030_010 Hb_000416_060 Hb_000416_060 Hb_005588_120--Hb_000416_060 Hb_132840_030 Hb_132840_030 Hb_005588_120--Hb_132840_030 Hb_005588_120--Hb_000256_160 Hb_001235_130 Hb_001235_130 Hb_005588_120--Hb_001235_130 Hb_000340_220 Hb_000340_220 Hb_005588_120--Hb_000340_220 Hb_143766_080 Hb_143766_080 Hb_001754_050--Hb_143766_080 Hb_000392_250 Hb_000392_250 Hb_001754_050--Hb_000392_250 Hb_004883_020 Hb_004883_020 Hb_001754_050--Hb_004883_020 Hb_000057_130 Hb_000057_130 Hb_001754_050--Hb_000057_130 Hb_004218_130 Hb_004218_130 Hb_001754_050--Hb_004218_130 Hb_006185_030 Hb_006185_030 Hb_007229_050--Hb_006185_030 Hb_007229_050--Hb_001235_130 Hb_098533_010 Hb_098533_010 Hb_007229_050--Hb_098533_010 Hb_007229_050--Hb_000157_140 Hb_007229_050--Hb_000256_160 Hb_000256_160--Hb_001235_130 Hb_003226_090 Hb_003226_090 Hb_000256_160--Hb_003226_090 Hb_000094_150 Hb_000094_150 Hb_000256_160--Hb_000094_150 Hb_002010_090 Hb_002010_090 Hb_000256_160--Hb_002010_090 Hb_004030_060 Hb_004030_060 Hb_000157_140--Hb_004030_060 Hb_007537_030 Hb_007537_030 Hb_000157_140--Hb_007537_030 Hb_007317_020 Hb_007317_020 Hb_000157_140--Hb_007317_020 Hb_011174_080 Hb_011174_080 Hb_000157_140--Hb_011174_080 Hb_000570_020 Hb_000570_020 Hb_000157_140--Hb_000570_020 Hb_187959_010 Hb_187959_010 Hb_003030_010--Hb_187959_010 Hb_003030_010--Hb_007229_050 Hb_003030_010--Hb_001754_050 Hb_029584_100 Hb_029584_100 Hb_003030_010--Hb_029584_100 Hb_003030_010--Hb_143766_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.07145 14.803 17.6017 22.4541 1.27087 2.29546
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.09305 4.18234 3.92988 16.9498 21.4407

CAGE analysis