Hb_004129_040

Information

Type -
Description -
Location Contig4129: 27141-43439
Sequence    

Annotation

kegg
ID vvi:100260824
description protein VACUOLELESS1
nr
ID XP_002283428.1
description PREDICTED: protein VACUOLELESS1 [Vitis vinifera]
swissprot
ID Q93VQ0
description Protein VACUOLELESS1 OS=Arabidopsis thaliana GN=VCL1 PE=1 SV=1
trembl
ID E0CU27
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g00570 PE=4 SV=1
Gene Ontology
ID GO:0005737
description protein vacuoleless1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40884: 37512-37873 , PASA_asmbl_40885: 38780-39194 , PASA_asmbl_40886: 42259-42574
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004129_040 0.0 - - PREDICTED: protein VACUOLELESS1 [Vitis vinifera]
2 Hb_002713_070 0.0680477289 - - hypothetical protein POPTR_0002s21620g [Populus trichocarpa]
3 Hb_005736_060 0.0763724935 - - PREDICTED: ribosome maturation protein SBDS [Jatropha curcas]
4 Hb_000307_090 0.0783421377 - - hypothetical protein CICLE_v10002475mg [Citrus clementina]
5 Hb_000111_340 0.0788638157 - - peptidyl-prolyl cis-trans isomerase h, ppih, putative [Ricinus communis]
6 Hb_000438_220 0.0845653926 - - PREDICTED: uncharacterized protein LOC105649213 [Jatropha curcas]
7 Hb_000136_170 0.0865721388 - - PREDICTED: uncharacterized protein LOC105645501 [Jatropha curcas]
8 Hb_004375_100 0.0903161462 - - PREDICTED: 60S ribosomal protein L19-1 [Jatropha curcas]
9 Hb_007944_040 0.0922697373 - - 60S ribosomal protein L18aB [Hevea brasiliensis]
10 Hb_000334_210 0.092412773 - - PREDICTED: uncharacterized protein LOC105628719 isoform X1 [Jatropha curcas]
11 Hb_010068_020 0.0929866698 - - PREDICTED: uncharacterized protein LOC105632966 [Jatropha curcas]
12 Hb_000926_300 0.09440139 - - PREDICTED: small ubiquitin-related modifier 1 [Jatropha curcas]
13 Hb_001269_270 0.094674788 - - 60S ribosomal protein L27B [Hevea brasiliensis]
14 Hb_006816_530 0.0953217423 - - 60S ribosomal protein L18, putative [Ricinus communis]
15 Hb_002660_030 0.0957546513 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003226_100 0.0959412395 - - PREDICTED: 60S ribosomal protein L18-2 [Jatropha curcas]
17 Hb_000062_650 0.0965355763 - - PREDICTED: uncharacterized protein LOC105628245 [Jatropha curcas]
18 Hb_033153_090 0.0977359122 - - PREDICTED: 28 kDa heat- and acid-stable phosphoprotein [Jatropha curcas]
19 Hb_003226_210 0.0978101776 - - hypothetical protein PRUPE_ppa013414mg [Prunus persica]
20 Hb_007416_020 0.0979911948 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic [Cucumis sativus]

Gene co-expression network

sample Hb_004129_040 Hb_004129_040 Hb_002713_070 Hb_002713_070 Hb_004129_040--Hb_002713_070 Hb_005736_060 Hb_005736_060 Hb_004129_040--Hb_005736_060 Hb_000307_090 Hb_000307_090 Hb_004129_040--Hb_000307_090 Hb_000111_340 Hb_000111_340 Hb_004129_040--Hb_000111_340 Hb_000438_220 Hb_000438_220 Hb_004129_040--Hb_000438_220 Hb_000136_170 Hb_000136_170 Hb_004129_040--Hb_000136_170 Hb_002713_070--Hb_000136_170 Hb_002660_030 Hb_002660_030 Hb_002713_070--Hb_002660_030 Hb_004375_100 Hb_004375_100 Hb_002713_070--Hb_004375_100 Hb_001505_020 Hb_001505_020 Hb_002713_070--Hb_001505_020 Hb_089839_020 Hb_089839_020 Hb_002713_070--Hb_089839_020 Hb_002925_030 Hb_002925_030 Hb_002713_070--Hb_002925_030 Hb_005736_060--Hb_000307_090 Hb_159809_020 Hb_159809_020 Hb_005736_060--Hb_159809_020 Hb_001421_060 Hb_001421_060 Hb_005736_060--Hb_001421_060 Hb_001616_040 Hb_001616_040 Hb_005736_060--Hb_001616_040 Hb_002963_010 Hb_002963_010 Hb_005736_060--Hb_002963_010 Hb_000307_090--Hb_159809_020 Hb_000926_300 Hb_000926_300 Hb_000307_090--Hb_000926_300 Hb_001235_190 Hb_001235_190 Hb_000307_090--Hb_001235_190 Hb_000307_090--Hb_002963_010 Hb_003599_040 Hb_003599_040 Hb_000307_090--Hb_003599_040 Hb_007944_040 Hb_007944_040 Hb_000111_340--Hb_007944_040 Hb_000334_210 Hb_000334_210 Hb_000111_340--Hb_000334_210 Hb_010672_060 Hb_010672_060 Hb_000111_340--Hb_010672_060 Hb_002588_010 Hb_002588_010 Hb_000111_340--Hb_002588_010 Hb_007304_070 Hb_007304_070 Hb_000111_340--Hb_007304_070 Hb_003656_070 Hb_003656_070 Hb_000111_340--Hb_003656_070 Hb_002316_060 Hb_002316_060 Hb_000438_220--Hb_002316_060 Hb_003641_020 Hb_003641_020 Hb_000438_220--Hb_003641_020 Hb_012368_020 Hb_012368_020 Hb_000438_220--Hb_012368_020 Hb_000438_220--Hb_000307_090 Hb_001638_260 Hb_001638_260 Hb_000438_220--Hb_001638_260 Hb_000134_070 Hb_000134_070 Hb_000136_170--Hb_000134_070 Hb_000136_170--Hb_001505_020 Hb_003623_050 Hb_003623_050 Hb_000136_170--Hb_003623_050 Hb_000265_050 Hb_000265_050 Hb_000136_170--Hb_000265_050 Hb_004567_120 Hb_004567_120 Hb_000136_170--Hb_004567_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.08841 1.22854 0.86829 1.20202 1.44903 2.14824
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.85358 6.62601 1.71161 1.73353 1.19626

CAGE analysis