Hb_004129_070

Information

Type -
Description -
Location Contig4129: 54608-59233
Sequence    

Annotation

kegg
ID rcu:RCOM_0696570
description hypothetical protein
nr
ID XP_012065732.1
description PREDICTED: conserved oligomeric Golgi complex subunit 5 [Jatropha curcas]
swissprot
ID Q9UP83
description Conserved oligomeric Golgi complex subunit 5 OS=Homo sapiens GN=COG5 PE=1 SV=3
trembl
ID A0A067LGT8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26554 PE=4 SV=1
Gene Ontology
ID GO:0017119
description conserved oligomeric golgi complex subunit 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40891: 54620-58386
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004129_070 0.0 - - PREDICTED: conserved oligomeric Golgi complex subunit 5 [Jatropha curcas]
2 Hb_000174_060 0.0389276753 - - zinc finger family protein [Populus trichocarpa]
3 Hb_002276_240 0.0419357439 - - PREDICTED: uncharacterized protein LOC105640682 [Jatropha curcas]
4 Hb_008253_020 0.0487806914 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]
5 Hb_006615_120 0.0511945656 - - PREDICTED: uncharacterized protein LOC105640682 [Jatropha curcas]
6 Hb_001033_050 0.0559581725 - - PREDICTED: acetylornithine deacetylase [Jatropha curcas]
7 Hb_001135_120 0.0567859599 - - PREDICTED: TBC1 domain family member 10B-like isoform X1 [Jatropha curcas]
8 Hb_001767_140 0.0609025764 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
9 Hb_009083_070 0.0613477885 - - PREDICTED: uncharacterized protein LOC105639870 [Jatropha curcas]
10 Hb_140049_040 0.0613629454 - - PREDICTED: uncharacterized protein LOC105632012 [Jatropha curcas]
11 Hb_008253_030 0.0628121461 - - PREDICTED: probable carboxylesterase 11 [Jatropha curcas]
12 Hb_000949_020 0.0654118404 transcription factor TF Family: Orphans PREDICTED: ethylene receptor isoform X2 [Jatropha curcas]
13 Hb_184798_080 0.065684827 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-related [Jatropha curcas]
14 Hb_000162_280 0.0669359113 - - PREDICTED: CTL-like protein DDB_G0288717 [Populus euphratica]
15 Hb_000243_210 0.0683204928 - - protein with unknown function [Ricinus communis]
16 Hb_007635_030 0.0684866544 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Jatropha curcas]
17 Hb_009615_170 0.0687807258 - - PREDICTED: sphingoid long-chain bases kinase 1 isoform X1 [Jatropha curcas]
18 Hb_007810_110 0.0688161538 - - PREDICTED: DNA/RNA-binding protein KIN17 [Jatropha curcas]
19 Hb_002325_040 0.0694533166 - - PREDICTED: uncharacterized protein LOC105645422 isoform X1 [Jatropha curcas]
20 Hb_001147_110 0.0696434973 - - PREDICTED: dynamin-2A-like [Jatropha curcas]

Gene co-expression network

sample Hb_004129_070 Hb_004129_070 Hb_000174_060 Hb_000174_060 Hb_004129_070--Hb_000174_060 Hb_002276_240 Hb_002276_240 Hb_004129_070--Hb_002276_240 Hb_008253_020 Hb_008253_020 Hb_004129_070--Hb_008253_020 Hb_006615_120 Hb_006615_120 Hb_004129_070--Hb_006615_120 Hb_001033_050 Hb_001033_050 Hb_004129_070--Hb_001033_050 Hb_001135_120 Hb_001135_120 Hb_004129_070--Hb_001135_120 Hb_140049_040 Hb_140049_040 Hb_000174_060--Hb_140049_040 Hb_000243_210 Hb_000243_210 Hb_000174_060--Hb_000243_210 Hb_001767_140 Hb_001767_140 Hb_000174_060--Hb_001767_140 Hb_159558_010 Hb_159558_010 Hb_000174_060--Hb_159558_010 Hb_009615_170 Hb_009615_170 Hb_000174_060--Hb_009615_170 Hb_009083_070 Hb_009083_070 Hb_002276_240--Hb_009083_070 Hb_002267_140 Hb_002267_140 Hb_002276_240--Hb_002267_140 Hb_001147_110 Hb_001147_110 Hb_002276_240--Hb_001147_110 Hb_002276_240--Hb_001767_140 Hb_008253_030 Hb_008253_030 Hb_002276_240--Hb_008253_030 Hb_000402_230 Hb_000402_230 Hb_008253_020--Hb_000402_230 Hb_007810_110 Hb_007810_110 Hb_008253_020--Hb_007810_110 Hb_008253_020--Hb_002276_240 Hb_001089_050 Hb_001089_050 Hb_008253_020--Hb_001089_050 Hb_000009_500 Hb_000009_500 Hb_008253_020--Hb_000009_500 Hb_000162_280 Hb_000162_280 Hb_006615_120--Hb_000162_280 Hb_009112_010 Hb_009112_010 Hb_006615_120--Hb_009112_010 Hb_006615_120--Hb_000174_060 Hb_006615_120--Hb_002276_240 Hb_006615_120--Hb_001033_050 Hb_000139_130 Hb_000139_130 Hb_001033_050--Hb_000139_130 Hb_004668_060 Hb_004668_060 Hb_001033_050--Hb_004668_060 Hb_001033_050--Hb_001135_120 Hb_001033_050--Hb_008253_020 Hb_010712_090 Hb_010712_090 Hb_001033_050--Hb_010712_090 Hb_002325_040 Hb_002325_040 Hb_001135_120--Hb_002325_040 Hb_001135_120--Hb_009083_070 Hb_003096_060 Hb_003096_060 Hb_001135_120--Hb_003096_060 Hb_184798_080 Hb_184798_080 Hb_001135_120--Hb_184798_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.2386 25.937 17.0614 19.7522 20.734 19.6467
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.3036 10.1153 12.8255 16.308 14.1033

CAGE analysis