Hb_004129_090

Information

Type -
Description -
Location Contig4129: 65825-75787
Sequence    

Annotation

kegg
ID pop:POPTR_0002s06020g
description POPTRDRAFT_551244; hypothetical protein
nr
ID XP_012087231.1
description PREDICTED: uncharacterized protein LOC105646039 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LPS8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10401 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40892: 65780-75868
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004129_090 0.0 - - PREDICTED: uncharacterized protein LOC105646039 [Jatropha curcas]
2 Hb_014497_100 0.083956036 - - PREDICTED: AT-rich interactive domain-containing protein 5 isoform X2 [Jatropha curcas]
3 Hb_001178_010 0.0864187438 - - PREDICTED: uncharacterized protein LOC105629461 [Jatropha curcas]
4 Hb_010098_020 0.1018609367 - - PREDICTED: protein BOLA4, chloroplastic/mitochondrial [Jatropha curcas]
5 Hb_002316_140 0.1029100749 - - PREDICTED: rac-like GTP-binding protein 3 [Populus euphratica]
6 Hb_001623_100 0.1040803846 - - Hydroxyethylthiazole kinase, putative [Ricinus communis]
7 Hb_001541_110 0.1119622735 - - PREDICTED: sufE-like protein 2, chloroplastic isoform X2 [Jatropha curcas]
8 Hb_000905_120 0.112338806 - - PREDICTED: uncharacterized protein LOC105628677 [Jatropha curcas]
9 Hb_000926_080 0.1166515082 - - PREDICTED: paraspeckle component 1 [Jatropha curcas]
10 Hb_002194_050 0.1225189902 - - PREDICTED: UPF0187 protein At3g61320, chloroplastic [Jatropha curcas]
11 Hb_009847_030 0.1227691717 - - zinc finger family protein [Populus trichocarpa]
12 Hb_000537_100 0.123158688 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
13 Hb_003883_010 0.1244298479 - - PREDICTED: cold-inducible RNA-binding protein [Jatropha curcas]
14 Hb_000003_680 0.1247369476 transcription factor TF Family: MYB-related PREDICTED: myb-like protein H [Jatropha curcas]
15 Hb_005946_040 0.1262518746 - - PREDICTED: probable protein phosphatase 2C 22 isoform X2 [Jatropha curcas]
16 Hb_007451_040 0.1285221886 - - PREDICTED: uncharacterized protein LOC105643411 [Jatropha curcas]
17 Hb_001541_050 0.1285486524 - - PREDICTED: serine/threonine-protein kinase AFC2-like [Jatropha curcas]
18 Hb_171554_010 0.1291826354 - - PREDICTED: uncharacterized protein LOC105634071 [Jatropha curcas]
19 Hb_002092_120 0.1295108922 - - PREDICTED: peptidyl-tRNA hydrolase, chloroplastic [Jatropha curcas]
20 Hb_008375_030 0.1298766659 - - PREDICTED: carbon catabolite repressor protein 4 homolog 4 isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_004129_090 Hb_004129_090 Hb_014497_100 Hb_014497_100 Hb_004129_090--Hb_014497_100 Hb_001178_010 Hb_001178_010 Hb_004129_090--Hb_001178_010 Hb_010098_020 Hb_010098_020 Hb_004129_090--Hb_010098_020 Hb_002316_140 Hb_002316_140 Hb_004129_090--Hb_002316_140 Hb_001623_100 Hb_001623_100 Hb_004129_090--Hb_001623_100 Hb_001541_110 Hb_001541_110 Hb_004129_090--Hb_001541_110 Hb_014497_100--Hb_001178_010 Hb_014497_100--Hb_002316_140 Hb_000537_100 Hb_000537_100 Hb_014497_100--Hb_000537_100 Hb_005946_040 Hb_005946_040 Hb_014497_100--Hb_005946_040 Hb_000163_260 Hb_000163_260 Hb_014497_100--Hb_000163_260 Hb_001178_010--Hb_000537_100 Hb_001178_010--Hb_002316_140 Hb_001900_140 Hb_001900_140 Hb_001178_010--Hb_001900_140 Hb_000926_200 Hb_000926_200 Hb_001178_010--Hb_000926_200 Hb_010098_020--Hb_002316_140 Hb_010098_020--Hb_000537_100 Hb_002284_210 Hb_002284_210 Hb_010098_020--Hb_002284_210 Hb_146255_020 Hb_146255_020 Hb_010098_020--Hb_146255_020 Hb_006615_050 Hb_006615_050 Hb_010098_020--Hb_006615_050 Hb_002572_020 Hb_002572_020 Hb_010098_020--Hb_002572_020 Hb_002316_140--Hb_002572_020 Hb_002316_140--Hb_000537_100 Hb_073973_090 Hb_073973_090 Hb_002316_140--Hb_073973_090 Hb_001623_100--Hb_014497_100 Hb_001623_100--Hb_002316_140 Hb_001623_100--Hb_001178_010 Hb_001623_100--Hb_010098_020 Hb_002972_010 Hb_002972_010 Hb_001623_100--Hb_002972_010 Hb_007451_040 Hb_007451_040 Hb_001541_110--Hb_007451_040 Hb_000003_780 Hb_000003_780 Hb_001541_110--Hb_000003_780 Hb_001587_180 Hb_001587_180 Hb_001541_110--Hb_001587_180 Hb_000413_060 Hb_000413_060 Hb_001541_110--Hb_000413_060 Hb_001863_120 Hb_001863_120 Hb_001541_110--Hb_001863_120 Hb_000926_080 Hb_000926_080 Hb_001541_110--Hb_000926_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.28077 2.27837 7.91438 4.0675 1.07318 1.89093
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.88475 4.05026 1.02772 1.01436 4.35555

CAGE analysis