Hb_004129_160

Information

Type -
Description -
Location Contig4129: 115197-116276
Sequence    

Annotation

kegg
ID rcu:RCOM_0539830
description small heat-shock protein, putative
nr
ID XP_002525886.1
description small heat-shock protein, putative [Ricinus communis]
swissprot
ID Q4UJB1
description Small heat shock protein C4 OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=hspc4-1 PE=3 SV=1
trembl
ID B9SIR7
description Small heat-shock protein, putative OS=Ricinus communis GN=RCOM_0539830 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004129_160 0.0 - - small heat-shock protein, putative [Ricinus communis]
2 Hb_001141_110 0.1486329324 - - hypothetical protein JCGZ_02206 [Jatropha curcas]
3 Hb_004679_060 0.2403263599 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005656_190 0.2460425513 - - proteasome subunit beta type 6,9, putative [Ricinus communis]
5 Hb_147752_010 0.2460577248 - - PREDICTED: 40S ribosomal protein S9-2-like isoform X1 [Populus euphratica]
6 Hb_170426_010 0.250790512 - - cytochrome b5 isoform Cb5-B [Vernicia fordii]
7 Hb_000045_210 0.2516352188 - - -
8 Hb_001369_600 0.2553366813 - - kinase, putative [Ricinus communis]
9 Hb_007254_080 0.2621501447 - - -
10 Hb_003376_290 0.2625355014 - - hypothetical protein POPTR_0010s22880g [Populus trichocarpa]
11 Hb_001059_120 0.2643627551 - - NADH dehydrogenase, putative [Ricinus communis]
12 Hb_054865_070 0.2651659393 transcription factor TF Family: bHLH basic helix-loop-helix family protein [Populus trichocarpa]
13 Hb_003007_010 0.2677044658 - - PREDICTED: probable peptide/nitrate transporter At3g43790 isoform X1 [Populus euphratica]
14 Hb_003540_200 0.2680020506 - - PREDICTED: E3 ubiquitin-protein ligase RMA3-like [Jatropha curcas]
15 Hb_000011_300 0.2686310709 - - PREDICTED: proteasome subunit alpha type-5 isoform X1 [Gossypium raimondii]
16 Hb_007313_080 0.2687801463 - - hypothetical protein CICLE_v10002804mg [Citrus clementina]
17 Hb_014720_010 0.2689241489 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000340_500 0.270471463 - - PREDICTED: aldo-keto reductase-like [Jatropha curcas]
19 Hb_003181_050 0.2714485606 - - PREDICTED: DNA replication complex GINS protein PSF2 [Jatropha curcas]
20 Hb_000289_070 0.2756747523 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004129_160 Hb_004129_160 Hb_001141_110 Hb_001141_110 Hb_004129_160--Hb_001141_110 Hb_004679_060 Hb_004679_060 Hb_004129_160--Hb_004679_060 Hb_005656_190 Hb_005656_190 Hb_004129_160--Hb_005656_190 Hb_147752_010 Hb_147752_010 Hb_004129_160--Hb_147752_010 Hb_170426_010 Hb_170426_010 Hb_004129_160--Hb_170426_010 Hb_000045_210 Hb_000045_210 Hb_004129_160--Hb_000045_210 Hb_001141_110--Hb_005656_190 Hb_001369_600 Hb_001369_600 Hb_001141_110--Hb_001369_600 Hb_000200_200 Hb_000200_200 Hb_001141_110--Hb_000200_200 Hb_003007_010 Hb_003007_010 Hb_001141_110--Hb_003007_010 Hb_007254_080 Hb_007254_080 Hb_001141_110--Hb_007254_080 Hb_004679_060--Hb_170426_010 Hb_001449_100 Hb_001449_100 Hb_004679_060--Hb_001449_100 Hb_007313_080 Hb_007313_080 Hb_004679_060--Hb_007313_080 Hb_000189_540 Hb_000189_540 Hb_004679_060--Hb_000189_540 Hb_020805_060 Hb_020805_060 Hb_004679_060--Hb_020805_060 Hb_004787_040 Hb_004787_040 Hb_004679_060--Hb_004787_040 Hb_005656_190--Hb_000200_200 Hb_000340_500 Hb_000340_500 Hb_005656_190--Hb_000340_500 Hb_000167_030 Hb_000167_030 Hb_005656_190--Hb_000167_030 Hb_009778_040 Hb_009778_040 Hb_005656_190--Hb_009778_040 Hb_003181_050 Hb_003181_050 Hb_005656_190--Hb_003181_050 Hb_001240_020 Hb_001240_020 Hb_147752_010--Hb_001240_020 Hb_000111_100 Hb_000111_100 Hb_147752_010--Hb_000111_100 Hb_000928_130 Hb_000928_130 Hb_147752_010--Hb_000928_130 Hb_000110_170 Hb_000110_170 Hb_147752_010--Hb_000110_170 Hb_007441_260 Hb_007441_260 Hb_147752_010--Hb_007441_260 Hb_000445_490 Hb_000445_490 Hb_147752_010--Hb_000445_490 Hb_004089_020 Hb_004089_020 Hb_170426_010--Hb_004089_020 Hb_170426_010--Hb_004787_040 Hb_170426_010--Hb_020805_060 Hb_170426_010--Hb_000189_540 Hb_000011_300 Hb_000011_300 Hb_170426_010--Hb_000011_300 Hb_141194_010 Hb_141194_010 Hb_000045_210--Hb_141194_010 Hb_044653_060 Hb_044653_060 Hb_000045_210--Hb_044653_060 Hb_027892_040 Hb_027892_040 Hb_000045_210--Hb_027892_040 Hb_001266_030 Hb_001266_030 Hb_000045_210--Hb_001266_030 Hb_012053_010 Hb_012053_010 Hb_000045_210--Hb_012053_010 Hb_000431_160 Hb_000431_160 Hb_000045_210--Hb_000431_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0435006 0 0.47264 0.0611752 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.318553 1.31477 0.44743 0.229149 0.123997

CAGE analysis