Hb_004129_180

Information

Type -
Description -
Location Contig4129: 127234-131659
Sequence    

Annotation

kegg
ID rcu:RCOM_0540360
description serine-threonine protein kinase, plant-type, putative (EC:1.3.1.74)
nr
ID KDP34540.1
description hypothetical protein JCGZ_11090 [Jatropha curcas]
swissprot
ID C0LGP4
description Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=2 SV=1
trembl
ID A0A067KQG5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11090 PE=3 SV=1
Gene Ontology
ID GO:0016021
description probable lrr receptor-like serine threonine-protein kinase at3g47570

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004129_180 0.0 - - hypothetical protein JCGZ_11090 [Jatropha curcas]
2 Hb_188163_010 0.0652613802 - - hypothetical protein CISIN_1g048732mg [Citrus sinensis]
3 Hb_010129_020 0.1140052309 - - cytochrome P450, putative [Ricinus communis]
4 Hb_067634_010 0.1226207232 - - hypothetical protein CICLE_v10006890mg, partial [Citrus clementina]
5 Hb_000312_030 0.1226240939 - - PREDICTED: uncharacterized protein LOC104888072 [Beta vulgaris subsp. vulgaris]
6 Hb_115868_030 0.1228607762 - - Hexaprenyldihydroxybenzoate methyltransferase, mitochondrial -like protein [Gossypium arboreum]
7 Hb_153924_010 0.1229102569 - - hypothetical protein JCGZ_22941 [Jatropha curcas]
8 Hb_000684_460 0.1229199466 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
9 Hb_056506_090 0.1229643557 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
10 Hb_109791_010 0.1234101945 - - -
11 Hb_000175_310 0.1243306519 - - polyprotein [Citrus endogenous pararetrovirus]
12 Hb_005465_050 0.1243798631 - - PREDICTED: uncharacterized protein LOC105635964 [Jatropha curcas]
13 Hb_105251_010 0.1254029035 - - ankyrin repeat-containing protein, putative [Ricinus communis]
14 Hb_003793_040 0.1257136784 - - hypothetical protein CARUB_v10021783mg [Capsella rubella]
15 Hb_001102_280 0.1260090561 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
16 Hb_031318_010 0.1264385991 - - -
17 Hb_152910_030 0.1264392106 - - PREDICTED: UDP-glycosyltransferase 89B1-like [Jatropha curcas]
18 Hb_000127_150 0.1265001598 - - PREDICTED: cytochrome P450 85A1-like [Jatropha curcas]
19 Hb_015866_010 0.1265265998 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
20 Hb_001833_030 0.1265630793 - - polyprotein [Oryza australiensis]

Gene co-expression network

sample Hb_004129_180 Hb_004129_180 Hb_188163_010 Hb_188163_010 Hb_004129_180--Hb_188163_010 Hb_010129_020 Hb_010129_020 Hb_004129_180--Hb_010129_020 Hb_067634_010 Hb_067634_010 Hb_004129_180--Hb_067634_010 Hb_000312_030 Hb_000312_030 Hb_004129_180--Hb_000312_030 Hb_115868_030 Hb_115868_030 Hb_004129_180--Hb_115868_030 Hb_153924_010 Hb_153924_010 Hb_004129_180--Hb_153924_010 Hb_188163_010--Hb_010129_020 Hb_097933_010 Hb_097933_010 Hb_188163_010--Hb_097933_010 Hb_000906_120 Hb_000906_120 Hb_188163_010--Hb_000906_120 Hb_002188_050 Hb_002188_050 Hb_188163_010--Hb_002188_050 Hb_006415_010 Hb_006415_010 Hb_188163_010--Hb_006415_010 Hb_010129_020--Hb_097933_010 Hb_010129_020--Hb_000906_120 Hb_001880_020 Hb_001880_020 Hb_010129_020--Hb_001880_020 Hb_010129_020--Hb_002188_050 Hb_067634_010--Hb_000312_030 Hb_067634_010--Hb_153924_010 Hb_056506_090 Hb_056506_090 Hb_067634_010--Hb_056506_090 Hb_067634_010--Hb_115868_030 Hb_000684_460 Hb_000684_460 Hb_067634_010--Hb_000684_460 Hb_109791_010 Hb_109791_010 Hb_067634_010--Hb_109791_010 Hb_000312_030--Hb_153924_010 Hb_000312_030--Hb_056506_090 Hb_000312_030--Hb_115868_030 Hb_000312_030--Hb_000684_460 Hb_000312_030--Hb_109791_010 Hb_115868_030--Hb_000684_460 Hb_115868_030--Hb_109791_010 Hb_000175_310 Hb_000175_310 Hb_115868_030--Hb_000175_310 Hb_115868_030--Hb_153924_010 Hb_153924_010--Hb_056506_090 Hb_005465_050 Hb_005465_050 Hb_153924_010--Hb_005465_050 Hb_153924_010--Hb_000684_460
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0264157 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.267149 0.594538

CAGE analysis