Hb_004137_030

Information

Type -
Description -
Location Contig4137: 13124-15852
Sequence    

Annotation

kegg
ID rcu:RCOM_0138300
description hypothetical protein
nr
ID XP_002526158.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SJI9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0138300 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004137_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_073973_170 0.0916736343 - - PREDICTED: uncharacterized protein LOC105638918 [Jatropha curcas]
3 Hb_002619_010 0.0927815921 - - -
4 Hb_001623_370 0.0988022947 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000714_020 0.1102116869 - - PREDICTED: uncharacterized protein LOC105635336 [Jatropha curcas]
6 Hb_004994_310 0.1113397112 - - Kiwellin, putative [Ricinus communis]
7 Hb_001956_050 0.1135609299 - - PREDICTED: uncharacterized protein C20orf24 homolog [Jatropha curcas]
8 Hb_000205_120 0.114641701 - - PREDICTED: casein kinase I-like isoform X3 [Jatropha curcas]
9 Hb_000120_240 0.1151860413 - - PREDICTED: uncharacterized protein LOC105630166 [Jatropha curcas]
10 Hb_004449_220 0.1152042623 transcription factor TF Family: C2H2 PREDICTED: uncharacterized zinc finger protein At4g06634 [Jatropha curcas]
11 Hb_002043_180 0.1158373755 - - PREDICTED: NADP-specific glutamate dehydrogenase [Jatropha curcas]
12 Hb_000976_270 0.1166097845 - - PREDICTED: uncharacterized protein LOC105646226 [Jatropha curcas]
13 Hb_001405_050 0.1184904417 - - PREDICTED: uncharacterized protein LOC100500641 [Glycine max]
14 Hb_002681_040 0.1200672753 - - PREDICTED: ribosomal RNA-processing protein 8 [Jatropha curcas]
15 Hb_001663_110 0.1211314754 - - RNA binding protein, putative [Ricinus communis]
16 Hb_011609_030 0.1213630225 - - conserved hypothetical protein 13 [Hevea brasiliensis]
17 Hb_011794_090 0.1226402707 - - PREDICTED: uncharacterized protein LOC105642993 [Jatropha curcas]
18 Hb_000768_050 0.1257107732 - - hypothetical protein RCOM_0845740 [Ricinus communis]
19 Hb_004447_030 0.1265763217 - - PREDICTED: glucose-induced degradation protein 4 homolog [Jatropha curcas]
20 Hb_005741_020 0.1274650838 - - PREDICTED: putative golgin subfamily A member 6-like protein 6 [Jatropha curcas]

Gene co-expression network

sample Hb_004137_030 Hb_004137_030 Hb_073973_170 Hb_073973_170 Hb_004137_030--Hb_073973_170 Hb_002619_010 Hb_002619_010 Hb_004137_030--Hb_002619_010 Hb_001623_370 Hb_001623_370 Hb_004137_030--Hb_001623_370 Hb_000714_020 Hb_000714_020 Hb_004137_030--Hb_000714_020 Hb_004994_310 Hb_004994_310 Hb_004137_030--Hb_004994_310 Hb_001956_050 Hb_001956_050 Hb_004137_030--Hb_001956_050 Hb_073973_170--Hb_002619_010 Hb_073973_170--Hb_001956_050 Hb_073973_170--Hb_000714_020 Hb_001405_050 Hb_001405_050 Hb_073973_170--Hb_001405_050 Hb_027380_040 Hb_027380_040 Hb_073973_170--Hb_027380_040 Hb_002619_010--Hb_000714_020 Hb_004374_010 Hb_004374_010 Hb_002619_010--Hb_004374_010 Hb_005741_020 Hb_005741_020 Hb_002619_010--Hb_005741_020 Hb_000590_090 Hb_000590_090 Hb_002619_010--Hb_000590_090 Hb_001623_370--Hb_000714_020 Hb_001514_020 Hb_001514_020 Hb_001623_370--Hb_001514_020 Hb_004502_030 Hb_004502_030 Hb_001623_370--Hb_004502_030 Hb_011609_030 Hb_011609_030 Hb_001623_370--Hb_011609_030 Hb_007992_030 Hb_007992_030 Hb_001623_370--Hb_007992_030 Hb_001663_110 Hb_001663_110 Hb_001623_370--Hb_001663_110 Hb_000714_020--Hb_011609_030 Hb_001493_100 Hb_001493_100 Hb_000714_020--Hb_001493_100 Hb_000714_020--Hb_001514_020 Hb_000714_020--Hb_004374_010 Hb_000165_030 Hb_000165_030 Hb_004994_310--Hb_000165_030 Hb_000977_130 Hb_000977_130 Hb_004994_310--Hb_000977_130 Hb_002997_170 Hb_002997_170 Hb_004994_310--Hb_002997_170 Hb_057183_040 Hb_057183_040 Hb_004994_310--Hb_057183_040 Hb_004994_310--Hb_001623_370 Hb_001956_050--Hb_000714_020 Hb_011930_010 Hb_011930_010 Hb_001956_050--Hb_011930_010 Hb_001956_050--Hb_011609_030 Hb_007416_200 Hb_007416_200 Hb_001956_050--Hb_007416_200 Hb_003813_200 Hb_003813_200 Hb_001956_050--Hb_003813_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.96783 0.695967 1.43495 0.612803 2.33164 3.21906
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.62335 2.56598 1.09608 0.508434 0.405576

CAGE analysis