Hb_004137_100

Information

Type -
Description -
Location Contig4137: 47434-50278
Sequence    

Annotation

kegg
ID rcu:RCOM_0138590
description alcohol dehydrogenase, putative (EC:1.1.1.284)
nr
ID XP_012066085.1
description PREDICTED: alcohol dehydrogenase 1 [Jatropha curcas]
swissprot
ID P25141
description Alcohol dehydrogenase 1 OS=Petunia hybrida GN=ADH1 PE=3 SV=1
trembl
ID A0A067LEV6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25236 PE=3 SV=1
Gene Ontology
ID GO:0008270
description alcohol dehydrogenase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40983: 47185-50330
cDNA
(Sanger)
(ID:Location)		 039_G18.ab1: 49269-50329 , 043_H05.ab1: 48965-50327 , 044_F22.ab1: 48797-50329 , 044_J18.ab1: 48777-50329

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004137_100 0.0 - - PREDICTED: alcohol dehydrogenase 1 [Jatropha curcas]
2 Hb_004586_150 0.1158317127 - - PREDICTED: uncharacterized protein LOC105630688 [Jatropha curcas]
3 Hb_009193_090 0.1177808954 - - PREDICTED: protein root UVB sensitive 3 isoform X1 [Jatropha curcas]
4 Hb_000184_240 0.1405854728 - - PREDICTED: uncharacterized protein LOC105647985 isoform X2 [Jatropha curcas]
5 Hb_000600_060 0.1440793581 - - PREDICTED: uncharacterized protein LOC105633515 isoform X1 [Jatropha curcas]
6 Hb_007545_120 0.1458170828 - - NADH:cytochrome b5 reductase [Vernicia fordii]
7 Hb_002391_360 0.1459958547 - - hypothetical protein CICLE_v10026208mg [Citrus clementina]
8 Hb_000161_210 0.146813137 - - PREDICTED: uncharacterized protein At5g49945-like [Jatropha curcas]
9 Hb_027746_020 0.1489566094 - - PREDICTED: replication protein A 70 kDa DNA-binding subunit B [Jatropha curcas]
10 Hb_002596_060 0.1537407363 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002676_120 0.1543623351 - - hypothetical protein POPTR_0002s23750g [Populus trichocarpa]
12 Hb_001227_100 0.1545284876 - - RecName: Full=Enolase 1; AltName: Full=2-phospho-D-glycerate hydro-lyase 1; AltName: Full=2-phosphoglycerate dehydratase 1; AltName: Allergen=Hev b 9 [Hevea brasiliensis]
13 Hb_129204_040 0.1549919473 - - PREDICTED: meiotic nuclear division protein 1 homolog isoform X1 [Jatropha curcas]
14 Hb_000122_080 0.1577708455 - - PREDICTED: staphylococcal-like nuclease CAN2 [Jatropha curcas]
15 Hb_002259_080 0.1600488085 - - protein transport protein sec23, putative [Ricinus communis]
16 Hb_000692_160 0.1607205454 - - Transportin 1 isoform 1 [Theobroma cacao]
17 Hb_019641_030 0.1613597752 - - chitin elicitor receptor kinase 1 [Chrysanthemum boreale]
18 Hb_000915_240 0.1622280409 - - catalytic, putative [Ricinus communis]
19 Hb_000333_110 0.1624757073 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000483_310 0.1632071907 - - PREDICTED: WD-40 repeat-containing protein MSI4-like [Jatropha curcas]

Gene co-expression network

sample Hb_004137_100 Hb_004137_100 Hb_004586_150 Hb_004586_150 Hb_004137_100--Hb_004586_150 Hb_009193_090 Hb_009193_090 Hb_004137_100--Hb_009193_090 Hb_000184_240 Hb_000184_240 Hb_004137_100--Hb_000184_240 Hb_000600_060 Hb_000600_060 Hb_004137_100--Hb_000600_060 Hb_007545_120 Hb_007545_120 Hb_004137_100--Hb_007545_120 Hb_002391_360 Hb_002391_360 Hb_004137_100--Hb_002391_360 Hb_000579_070 Hb_000579_070 Hb_004586_150--Hb_000579_070 Hb_004586_150--Hb_000184_240 Hb_002676_120 Hb_002676_120 Hb_004586_150--Hb_002676_120 Hb_000963_040 Hb_000963_040 Hb_004586_150--Hb_000963_040 Hb_000261_210 Hb_000261_210 Hb_004586_150--Hb_000261_210 Hb_009193_090--Hb_007545_120 Hb_001633_080 Hb_001633_080 Hb_009193_090--Hb_001633_080 Hb_009193_090--Hb_002676_120 Hb_002686_200 Hb_002686_200 Hb_009193_090--Hb_002686_200 Hb_159809_070 Hb_159809_070 Hb_009193_090--Hb_159809_070 Hb_006570_160 Hb_006570_160 Hb_009193_090--Hb_006570_160 Hb_000082_010 Hb_000082_010 Hb_000184_240--Hb_000082_010 Hb_000483_310 Hb_000483_310 Hb_000184_240--Hb_000483_310 Hb_004970_140 Hb_004970_140 Hb_000184_240--Hb_004970_140 Hb_000184_240--Hb_002676_120 Hb_000184_240--Hb_009193_090 Hb_000460_080 Hb_000460_080 Hb_000600_060--Hb_000460_080 Hb_000600_060--Hb_000963_040 Hb_000120_280 Hb_000120_280 Hb_000600_060--Hb_000120_280 Hb_000352_300 Hb_000352_300 Hb_000600_060--Hb_000352_300 Hb_001141_310 Hb_001141_310 Hb_000600_060--Hb_001141_310 Hb_000477_050 Hb_000477_050 Hb_000600_060--Hb_000477_050 Hb_001660_100 Hb_001660_100 Hb_007545_120--Hb_001660_100 Hb_001104_230 Hb_001104_230 Hb_007545_120--Hb_001104_230 Hb_001104_100 Hb_001104_100 Hb_007545_120--Hb_001104_100 Hb_002217_350 Hb_002217_350 Hb_007545_120--Hb_002217_350 Hb_007545_120--Hb_001633_080 Hb_002259_080 Hb_002259_080 Hb_002391_360--Hb_002259_080 Hb_000365_030 Hb_000365_030 Hb_002391_360--Hb_000365_030 Hb_000130_020 Hb_000130_020 Hb_002391_360--Hb_000130_020 Hb_006501_010 Hb_006501_010 Hb_002391_360--Hb_006501_010 Hb_005730_010 Hb_005730_010 Hb_002391_360--Hb_005730_010 Hb_000635_030 Hb_000635_030 Hb_002391_360--Hb_000635_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
77.5176 59.7389 208.171 248.485 158.908 128.164
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
56.2546 66.3249 94.9844 337.769 50.1424

CAGE analysis