Hb_004137_110

Information

Type -
Description -
Location Contig4137: 56095-60195
Sequence    

Annotation

kegg
ID rcu:RCOM_0138600
description Auxin efflux carrier component, putative
nr
ID XP_012066086.1
description PREDICTED: probable auxin efflux carrier component 6 [Jatropha curcas]
swissprot
ID Q9SQH6
description Probable auxin efflux carrier component 6 OS=Arabidopsis thaliana GN=PIN6 PE=2 SV=2
trembl
ID A0A067L3K6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25237 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable auxin efflux carrier component 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40985: 56093-57523 , PASA_asmbl_40987: 58937-59876
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004137_110 0.0 - - PREDICTED: probable auxin efflux carrier component 6 [Jatropha curcas]
2 Hb_005977_080 0.072101521 transcription factor TF Family: bZIP PREDICTED: transcription factor HY5-like [Jatropha curcas]
3 Hb_010449_010 0.0799560638 - - l-ascorbate oxidase, putative [Ricinus communis]
4 Hb_000103_220 0.083731217 - - PREDICTED: uncharacterized protein LOC105632036 [Jatropha curcas]
5 Hb_023640_020 0.0839398567 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000441_130 0.0876962491 - - PREDICTED: homeobox-leucine zipper protein HOX32 [Vitis vinifera]
7 Hb_017434_010 0.0881708889 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
8 Hb_003207_120 0.0896268619 - - molybdopterin cofactor sulfurase, putative [Ricinus communis]
9 Hb_000160_190 0.0914032794 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Jatropha curcas]
10 Hb_152910_050 0.0985411039 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
11 Hb_098315_060 0.0996230707 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 7-like [Jatropha curcas]
12 Hb_017383_010 0.1003313694 - - PREDICTED: uncharacterized protein LOC105628176 [Jatropha curcas]
13 Hb_031321_020 0.1012277341 - - hypothetical protein POPTR_0003s15520g [Populus trichocarpa]
14 Hb_000134_130 0.1040174892 - - PREDICTED: uncharacterized protein LOC105628670 [Jatropha curcas]
15 Hb_001519_090 0.1044940354 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
16 Hb_000139_040 0.1063545172 - - spermine synthase, putative [Ricinus communis]
17 Hb_019973_010 0.1078968752 - - PREDICTED: probable methyltransferase PMT18 isoform X2 [Jatropha curcas]
18 Hb_002894_060 0.1080835525 - - respiratory burst oxidase D [Manihot esculenta]
19 Hb_000331_170 0.108152043 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 [Jatropha curcas]
20 Hb_040852_010 0.1088400226 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004137_110 Hb_004137_110 Hb_005977_080 Hb_005977_080 Hb_004137_110--Hb_005977_080 Hb_010449_010 Hb_010449_010 Hb_004137_110--Hb_010449_010 Hb_000103_220 Hb_000103_220 Hb_004137_110--Hb_000103_220 Hb_023640_020 Hb_023640_020 Hb_004137_110--Hb_023640_020 Hb_000441_130 Hb_000441_130 Hb_004137_110--Hb_000441_130 Hb_017434_010 Hb_017434_010 Hb_004137_110--Hb_017434_010 Hb_000031_240 Hb_000031_240 Hb_005977_080--Hb_000031_240 Hb_005977_080--Hb_023640_020 Hb_000160_190 Hb_000160_190 Hb_005977_080--Hb_000160_190 Hb_003207_120 Hb_003207_120 Hb_005977_080--Hb_003207_120 Hb_000331_170 Hb_000331_170 Hb_005977_080--Hb_000331_170 Hb_017383_010 Hb_017383_010 Hb_010449_010--Hb_017383_010 Hb_000032_420 Hb_000032_420 Hb_010449_010--Hb_000032_420 Hb_010449_010--Hb_017434_010 Hb_010449_010--Hb_000103_220 Hb_000996_070 Hb_000996_070 Hb_010449_010--Hb_000996_070 Hb_098315_060 Hb_098315_060 Hb_010449_010--Hb_098315_060 Hb_000103_220--Hb_017434_010 Hb_152910_050 Hb_152910_050 Hb_000103_220--Hb_152910_050 Hb_000103_220--Hb_098315_060 Hb_000103_220--Hb_017383_010 Hb_003376_020 Hb_003376_020 Hb_000103_220--Hb_003376_020 Hb_040852_010 Hb_040852_010 Hb_000103_220--Hb_040852_010 Hb_023640_020--Hb_000160_190 Hb_004128_150 Hb_004128_150 Hb_023640_020--Hb_004128_150 Hb_004007_050 Hb_004007_050 Hb_023640_020--Hb_004007_050 Hb_000139_040 Hb_000139_040 Hb_023640_020--Hb_000139_040 Hb_000441_130--Hb_000996_070 Hb_000441_130--Hb_000032_420 Hb_000441_130--Hb_017383_010 Hb_000441_130--Hb_010449_010 Hb_000077_280 Hb_000077_280 Hb_000441_130--Hb_000077_280 Hb_017434_010--Hb_098315_060 Hb_017434_010--Hb_152910_050 Hb_000009_270 Hb_000009_270 Hb_017434_010--Hb_000009_270 Hb_001021_120 Hb_001021_120 Hb_017434_010--Hb_001021_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.014883 0.408546 3.12021 2.51031 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0256562 1.21765

CAGE analysis