Hb_004143_040

Information

Type -
Description -
Location Contig4143: 21726-23556
Sequence    

Annotation

kegg
ID rcu:RCOM_1039580
description argininosuccinate lyase, putative (EC:4.3.2.1)
nr
ID XP_002514045.1
description argininosuccinate lyase, putative [Ricinus communis]
swissprot
ID Q9LEU8
description Argininosuccinate lyase, chloroplastic OS=Arabidopsis thaliana GN=At5g10920 PE=2 SV=1
trembl
ID B9RJX6
description Argininosuccinate lyase, putative OS=Ricinus communis GN=RCOM_1039580 PE=3 SV=1
Gene Ontology
ID GO:0016829
description argininosuccinate chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41018: 21618-21909 , PASA_asmbl_41019: 23736-23987
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004143_040 0.0 - - argininosuccinate lyase, putative [Ricinus communis]
2 Hb_000023_280 0.0766689608 - - hypothetical protein POPTR_0006s28210g [Populus trichocarpa]
3 Hb_000116_410 0.0771495113 - - hypothetical protein JCGZ_22416 [Jatropha curcas]
4 Hb_003373_030 0.0806132285 - - PREDICTED: serine/threonine-protein kinase ATG1 [Jatropha curcas]
5 Hb_002662_020 0.0813253459 - - PREDICTED: F-box protein At1g47056-like [Jatropha curcas]
6 Hb_003761_010 0.0841874227 - - alcohol dehydrogenase, putative [Ricinus communis]
7 Hb_001205_240 0.0912455188 - - PREDICTED: uncharacterized protein LOC105645528 [Jatropha curcas]
8 Hb_007336_010 0.0935723 - - PREDICTED: F-box protein At1g47056-like [Jatropha curcas]
9 Hb_001492_020 0.0958534593 - - PREDICTED: diacylglycerol kinase 3-like [Jatropha curcas]
10 Hb_001635_090 0.0960148359 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 7 isoform X1 [Populus euphratica]
11 Hb_010142_030 0.09603429 - - PREDICTED: isoamylase 3, chloroplastic isoform X2 [Jatropha curcas]
12 Hb_005269_040 0.0962596402 - - PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At1g06270 [Jatropha curcas]
13 Hb_028285_010 0.0992629714 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Jatropha curcas]
14 Hb_000890_210 0.0993391415 - - PREDICTED: serine/threonine-protein kinase PBS1 isoform X1 [Eucalyptus grandis]
15 Hb_000173_490 0.0995167418 - - PREDICTED: F-box/LRR-repeat protein 4 isoform X2 [Jatropha curcas]
16 Hb_032278_030 0.1008110879 - - protein phosphatase 2c, putative [Ricinus communis]
17 Hb_006922_010 0.1014295219 - - PREDICTED: F-box/kelch-repeat protein At3g23880-like [Jatropha curcas]
18 Hb_074715_010 0.1027029721 - - PREDICTED: disease resistance protein RPS6-like isoform X2 [Jatropha curcas]
19 Hb_005048_130 0.103603871 - - hypothetical protein POPTR_0004s03700g [Populus trichocarpa]
20 Hb_000028_370 0.1041042873 - - Guanine nucleotide-binding protein alpha-2 subunit [Glycine soja]

Gene co-expression network

sample Hb_004143_040 Hb_004143_040 Hb_000023_280 Hb_000023_280 Hb_004143_040--Hb_000023_280 Hb_000116_410 Hb_000116_410 Hb_004143_040--Hb_000116_410 Hb_003373_030 Hb_003373_030 Hb_004143_040--Hb_003373_030 Hb_002662_020 Hb_002662_020 Hb_004143_040--Hb_002662_020 Hb_003761_010 Hb_003761_010 Hb_004143_040--Hb_003761_010 Hb_001205_240 Hb_001205_240 Hb_004143_040--Hb_001205_240 Hb_010142_030 Hb_010142_030 Hb_000023_280--Hb_010142_030 Hb_000023_280--Hb_003761_010 Hb_000645_090 Hb_000645_090 Hb_000023_280--Hb_000645_090 Hb_001215_040 Hb_001215_040 Hb_000023_280--Hb_001215_040 Hb_000023_280--Hb_000116_410 Hb_001635_090 Hb_001635_090 Hb_000116_410--Hb_001635_090 Hb_000116_410--Hb_010142_030 Hb_000191_150 Hb_000191_150 Hb_000116_410--Hb_000191_150 Hb_001178_070 Hb_001178_070 Hb_000116_410--Hb_001178_070 Hb_028285_010 Hb_028285_010 Hb_000116_410--Hb_028285_010 Hb_008770_030 Hb_008770_030 Hb_003373_030--Hb_008770_030 Hb_000866_170 Hb_000866_170 Hb_003373_030--Hb_000866_170 Hb_032278_030 Hb_032278_030 Hb_003373_030--Hb_032278_030 Hb_015807_150 Hb_015807_150 Hb_003373_030--Hb_015807_150 Hb_000890_210 Hb_000890_210 Hb_003373_030--Hb_000890_210 Hb_005269_040 Hb_005269_040 Hb_002662_020--Hb_005269_040 Hb_032808_030 Hb_032808_030 Hb_002662_020--Hb_032808_030 Hb_002662_020--Hb_000116_410 Hb_002026_210 Hb_002026_210 Hb_002662_020--Hb_002026_210 Hb_000347_180 Hb_000347_180 Hb_002662_020--Hb_000347_180 Hb_003761_010--Hb_001205_240 Hb_000185_030 Hb_000185_030 Hb_003761_010--Hb_000185_030 Hb_003761_010--Hb_028285_010 Hb_002205_110 Hb_002205_110 Hb_003761_010--Hb_002205_110 Hb_000028_370 Hb_000028_370 Hb_003761_010--Hb_000028_370 Hb_002232_410 Hb_002232_410 Hb_003761_010--Hb_002232_410 Hb_001205_240--Hb_000028_370 Hb_008725_230 Hb_008725_230 Hb_001205_240--Hb_008725_230 Hb_001205_240--Hb_002205_110 Hb_000732_010 Hb_000732_010 Hb_001205_240--Hb_000732_010 Hb_000710_060 Hb_000710_060 Hb_001205_240--Hb_000710_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.42017 11.884 3.85323 11.1568 5.30913 11.2886
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.86301 7.29739 8.35399 10.3999 3.60033

CAGE analysis