Hb_004143_050

Information

Type -
Description -
Location Contig4143: 27743-33316
Sequence    

Annotation

kegg
ID rcu:RCOM_1039590
description hypothetical protein
nr
ID XP_012068020.1
description PREDICTED: uncharacterized protein LOC105630712 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LBJ2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15891 PE=4 SV=1
Gene Ontology
ID GO:0008168
description ribosomal rna small subunit methyltransferase a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41020: 27751-31604 , PASA_asmbl_41021: 28511-31514 , PASA_asmbl_41022: 29766-30037 , PASA_asmbl_41024: 32653-33121
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004143_050 0.0 - - PREDICTED: uncharacterized protein LOC105630712 [Jatropha curcas]
2 Hb_000742_260 0.1046731154 - - hypothetical protein RCOM_1336320 [Ricinus communis]
3 Hb_000245_270 0.1106610988 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
4 Hb_019026_030 0.1133243547 - - hypothetical protein JCGZ_00744 [Jatropha curcas]
5 Hb_003800_010 0.119829031 - - PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Jatropha curcas]
6 Hb_000506_130 0.1204331676 - - DGCR14-related family protein [Populus trichocarpa]
7 Hb_029238_020 0.12148685 - - PREDICTED: expansin-like A1 [Jatropha curcas]
8 Hb_125884_010 0.1334333125 - - PREDICTED: metalloendoproteinase 1-like [Jatropha curcas]
9 Hb_052113_020 0.1395874575 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
10 Hb_001213_140 0.1414872277 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
11 Hb_000988_020 0.1436423287 - - PREDICTED: transcription factor bHLH112 isoform X2 [Jatropha curcas]
12 Hb_013691_060 0.1447764427 - - PREDICTED: uncharacterized protein LOC105119066 [Populus euphratica]
13 Hb_004968_050 0.1452896597 - - PREDICTED: putative lipid-transfer protein DIR1 [Jatropha curcas]
14 Hb_019516_050 0.1461324418 - - hypothetical protein JCGZ_04619 [Jatropha curcas]
15 Hb_011101_010 0.1464354103 - - hypothetical protein JCGZ_25132 [Jatropha curcas]
16 Hb_000252_190 0.1489645442 - - PREDICTED: uncharacterized protein LOC105644975 [Jatropha curcas]
17 Hb_116349_090 0.1522391681 - - PREDICTED: probable galacturonosyltransferase-like 9 [Jatropha curcas]
18 Hb_007441_150 0.1529525142 - - Ankyrin repeat family protein [Theobroma cacao]
19 Hb_004282_040 0.1539898828 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
20 Hb_000805_150 0.1547280088 transcription factor TF Family: GRAS transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_004143_050 Hb_004143_050 Hb_000742_260 Hb_000742_260 Hb_004143_050--Hb_000742_260 Hb_000245_270 Hb_000245_270 Hb_004143_050--Hb_000245_270 Hb_019026_030 Hb_019026_030 Hb_004143_050--Hb_019026_030 Hb_003800_010 Hb_003800_010 Hb_004143_050--Hb_003800_010 Hb_000506_130 Hb_000506_130 Hb_004143_050--Hb_000506_130 Hb_029238_020 Hb_029238_020 Hb_004143_050--Hb_029238_020 Hb_013691_060 Hb_013691_060 Hb_000742_260--Hb_013691_060 Hb_000365_190 Hb_000365_190 Hb_000742_260--Hb_000365_190 Hb_004218_290 Hb_004218_290 Hb_000742_260--Hb_004218_290 Hb_113396_010 Hb_113396_010 Hb_000742_260--Hb_113396_010 Hb_011101_010 Hb_011101_010 Hb_000742_260--Hb_011101_010 Hb_000245_270--Hb_000506_130 Hb_000805_150 Hb_000805_150 Hb_000245_270--Hb_000805_150 Hb_000245_270--Hb_029238_020 Hb_116349_090 Hb_116349_090 Hb_000245_270--Hb_116349_090 Hb_078901_010 Hb_078901_010 Hb_000245_270--Hb_078901_010 Hb_003209_040 Hb_003209_040 Hb_019026_030--Hb_003209_040 Hb_027905_010 Hb_027905_010 Hb_019026_030--Hb_027905_010 Hb_001213_140 Hb_001213_140 Hb_019026_030--Hb_001213_140 Hb_000777_020 Hb_000777_020 Hb_019026_030--Hb_000777_020 Hb_000827_090 Hb_000827_090 Hb_019026_030--Hb_000827_090 Hb_000252_190 Hb_000252_190 Hb_003800_010--Hb_000252_190 Hb_087468_010 Hb_087468_010 Hb_003800_010--Hb_087468_010 Hb_000417_230 Hb_000417_230 Hb_003800_010--Hb_000417_230 Hb_052113_020 Hb_052113_020 Hb_003800_010--Hb_052113_020 Hb_005687_060 Hb_005687_060 Hb_003800_010--Hb_005687_060 Hb_000506_140 Hb_000506_140 Hb_000506_130--Hb_000506_140 Hb_000506_130--Hb_052113_020 Hb_017434_020 Hb_017434_020 Hb_000506_130--Hb_017434_020 Hb_000506_130--Hb_029238_020 Hb_029238_020--Hb_116349_090 Hb_029238_020--Hb_000805_150 Hb_001511_270 Hb_001511_270 Hb_029238_020--Hb_001511_270 Hb_002234_200 Hb_002234_200 Hb_029238_020--Hb_002234_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.00286 259.25 32.9405 146.296 0.865565 0.825434
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.50704 7.75055 5.37141 11.8043 29.2458

CAGE analysis