Hb_004143_110

Information

Type -
Description -
Location Contig4143: 82783-86176
Sequence    

Annotation

kegg
ID pop:POPTR_0006s24150g
description POPTRDRAFT_561627; geranylgeranyl transferase alpha subunit-related family protein
nr
ID XP_012068032.1
description PREDICTED: uncharacterized protein LOC105630719 isoform X2 [Jatropha curcas]
swissprot
ID Q5EA80
description Geranylgeranyl transferase type-2 subunit alpha OS=Bos taurus GN=RABGGTA PE=2 SV=1
trembl
ID A0A067KZ54
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15898 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41041: 82832-86316 , PASA_asmbl_41043: 85159-85409
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004143_110 0.0 - - PREDICTED: uncharacterized protein LOC105630719 isoform X2 [Jatropha curcas]
2 Hb_004453_150 0.088502012 - - BnaC02g13240D [Brassica napus]
3 Hb_002272_260 0.1017267759 - - -
4 Hb_015057_010 0.1021860128 - - PREDICTED: uncharacterized exonuclease domain-containing protein At3g15140 [Jatropha curcas]
5 Hb_006788_070 0.1030551292 - - 2-methyl-6-geranylgeranylbenzoquinone methyltranferase [Hevea brasiliensis]
6 Hb_009558_020 0.1063044522 - - PREDICTED: E3 ubiquitin-protein ligase PRT6 isoform X1 [Jatropha curcas]
7 Hb_004374_200 0.1166010569 - - putative GMP synthase [Oxybasis rubra]
8 Hb_000676_290 0.1166258606 - - PREDICTED: glutaredoxin-C3 [Jatropha curcas]
9 Hb_000101_090 0.1179645939 - - PREDICTED: ferredoxin-thioredoxin reductase catalytic chain, chloroplastic [Camelina sativa]
10 Hb_005539_290 0.1183930679 - - unknown [Lotus japonicus]
11 Hb_002301_280 0.1188078405 transcription factor TF Family: SBP hypothetical protein JCGZ_21462 [Jatropha curcas]
12 Hb_000771_100 0.1191818866 - - Os06g0527300 [Oryza sativa Japonica Group]
13 Hb_002112_040 0.1191820758 - - PREDICTED: uncharacterized protein LOC105641009 [Jatropha curcas]
14 Hb_007193_100 0.1198398855 - - syntaxin family protein [Populus trichocarpa]
15 Hb_000175_070 0.1225925835 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 11 isoform X1 [Jatropha curcas]
16 Hb_000620_080 0.1241515346 - - hypothetical protein F775_32679 [Aegilops tauschii]
17 Hb_092100_020 0.1243298059 - - strictosidine synthase, putative [Ricinus communis]
18 Hb_005686_110 0.1246758227 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Populus euphratica]
19 Hb_001047_010 0.1257216505 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001454_140 0.1262448349 - - protein arginine n-methyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_004143_110 Hb_004143_110 Hb_004453_150 Hb_004453_150 Hb_004143_110--Hb_004453_150 Hb_002272_260 Hb_002272_260 Hb_004143_110--Hb_002272_260 Hb_015057_010 Hb_015057_010 Hb_004143_110--Hb_015057_010 Hb_006788_070 Hb_006788_070 Hb_004143_110--Hb_006788_070 Hb_009558_020 Hb_009558_020 Hb_004143_110--Hb_009558_020 Hb_004374_200 Hb_004374_200 Hb_004143_110--Hb_004374_200 Hb_004453_150--Hb_015057_010 Hb_011161_040 Hb_011161_040 Hb_004453_150--Hb_011161_040 Hb_025193_050 Hb_025193_050 Hb_004453_150--Hb_025193_050 Hb_007193_100 Hb_007193_100 Hb_004453_150--Hb_007193_100 Hb_004453_150--Hb_002272_260 Hb_000175_070 Hb_000175_070 Hb_004453_150--Hb_000175_070 Hb_000771_100 Hb_000771_100 Hb_002272_260--Hb_000771_100 Hb_000676_290 Hb_000676_290 Hb_002272_260--Hb_000676_290 Hb_002301_280 Hb_002301_280 Hb_002272_260--Hb_002301_280 Hb_002259_150 Hb_002259_150 Hb_002272_260--Hb_002259_150 Hb_011174_010 Hb_011174_010 Hb_002272_260--Hb_011174_010 Hb_000963_190 Hb_000963_190 Hb_015057_010--Hb_000963_190 Hb_001454_140 Hb_001454_140 Hb_015057_010--Hb_001454_140 Hb_001235_070 Hb_001235_070 Hb_015057_010--Hb_001235_070 Hb_000380_010 Hb_000380_010 Hb_015057_010--Hb_000380_010 Hb_015057_010--Hb_009558_020 Hb_006788_070--Hb_000175_070 Hb_000023_140 Hb_000023_140 Hb_006788_070--Hb_000023_140 Hb_011310_070 Hb_011310_070 Hb_006788_070--Hb_011310_070 Hb_006788_070--Hb_009558_020 Hb_005063_040 Hb_005063_040 Hb_006788_070--Hb_005063_040 Hb_006788_070--Hb_007193_100 Hb_009558_020--Hb_000175_070 Hb_000671_100 Hb_000671_100 Hb_009558_020--Hb_000671_100 Hb_010261_020 Hb_010261_020 Hb_009558_020--Hb_010261_020 Hb_000365_360 Hb_000365_360 Hb_009558_020--Hb_000365_360 Hb_009558_020--Hb_007193_100 Hb_007101_100 Hb_007101_100 Hb_004374_200--Hb_007101_100 Hb_004374_200--Hb_001454_140 Hb_005686_110 Hb_005686_110 Hb_004374_200--Hb_005686_110 Hb_002374_160 Hb_002374_160 Hb_004374_200--Hb_002374_160 Hb_000620_080 Hb_000620_080 Hb_004374_200--Hb_000620_080 Hb_001124_210 Hb_001124_210 Hb_004374_200--Hb_001124_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.13909 0.213611 0.246886 0.741921 0.877195 2.52351
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.18379 1.13102 1.15344 0.303526 0.170889

CAGE analysis