Hb_004143_120

Information

Type -
Description -
Location Contig4143: 89110-97773
Sequence    

Annotation

kegg
ID rcu:RCOM_1039720
description map3k delta-1 protein kinase, putative (EC:2.7.11.25)
nr
ID XP_012068034.1
description PREDICTED: serine/threonine-protein kinase CTR1 [Jatropha curcas]
swissprot
ID Q05609
description Serine/threonine-protein kinase CTR1 OS=Arabidopsis thaliana GN=CTR1 PE=1 SV=1
trembl
ID A0A067L2M1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15900 PE=3 SV=1
Gene Ontology
ID GO:0005622
description serine threonine-protein kinase ctr1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41044: 96197-96746
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004143_120 0.0 - - PREDICTED: serine/threonine-protein kinase CTR1 [Jatropha curcas]
2 Hb_000343_100 0.1643340764 - - PREDICTED: regulator of telomere elongation helicase 1 homolog [Jatropha curcas]
3 Hb_182680_010 0.1722922876 - - hypothetical protein JCGZ_07831 [Jatropha curcas]
4 Hb_003428_100 0.173971587 - - Polygalacturonase precursor, putative [Ricinus communis]
5 Hb_005389_190 0.1943257286 - - glutamate receptor 2 plant, putative [Ricinus communis]
6 Hb_002233_040 0.1951304789 - - PREDICTED: uncharacterized protein LOC105629659 [Jatropha curcas]
7 Hb_000181_020 0.2187831223 - - PREDICTED: D-amino-acid transaminase, chloroplastic-like [Jatropha curcas]
8 Hb_003813_120 0.2197075242 - - zinc finger protein, putative [Ricinus communis]
9 Hb_000209_110 0.2294769788 - - PREDICTED: receptor-like protein kinase BRI1-like 3 [Jatropha curcas]
10 Hb_029510_110 0.2299869967 - - PREDICTED: protein PLANT CADMIUM RESISTANCE 8-like [Jatropha curcas]
11 Hb_007943_160 0.2352613239 - - PREDICTED: aspartate aminotransferase, cytoplasmic [Jatropha curcas]
12 Hb_000165_210 0.2378442327 - - PREDICTED: trihelix transcription factor ASIL2 isoform X2 [Jatropha curcas]
13 Hb_001104_200 0.2409179312 - - Phytosulfokine 3 precursor, putative [Theobroma cacao]
14 Hb_000041_060 0.2415955129 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
15 Hb_006275_010 0.2422766167 - - PREDICTED: ribulose bisphosphate carboxylase small chain clone 512-like [Jatropha curcas]
16 Hb_000347_110 0.2429570063 - - BnaA05g25330D [Brassica napus]
17 Hb_000414_110 0.2436980808 - - PREDICTED: MATE efflux family protein 5 isoform X1 [Populus euphratica]
18 Hb_039145_010 0.2450476972 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
19 Hb_011360_060 0.2451628764 - - glycogen phosphorylase, putative [Ricinus communis]
20 Hb_000120_390 0.2489478746 - - PREDICTED: uncharacterized transporter YBR287W-like [Jatropha curcas]

Gene co-expression network

sample Hb_004143_120 Hb_004143_120 Hb_000343_100 Hb_000343_100 Hb_004143_120--Hb_000343_100 Hb_182680_010 Hb_182680_010 Hb_004143_120--Hb_182680_010 Hb_003428_100 Hb_003428_100 Hb_004143_120--Hb_003428_100 Hb_005389_190 Hb_005389_190 Hb_004143_120--Hb_005389_190 Hb_002233_040 Hb_002233_040 Hb_004143_120--Hb_002233_040 Hb_000181_020 Hb_000181_020 Hb_004143_120--Hb_000181_020 Hb_003813_120 Hb_003813_120 Hb_000343_100--Hb_003813_120 Hb_000384_050 Hb_000384_050 Hb_000343_100--Hb_000384_050 Hb_000343_100--Hb_000181_020 Hb_000347_110 Hb_000347_110 Hb_000343_100--Hb_000347_110 Hb_000098_310 Hb_000098_310 Hb_000343_100--Hb_000098_310 Hb_182680_010--Hb_000343_100 Hb_007943_160 Hb_007943_160 Hb_182680_010--Hb_007943_160 Hb_000209_110 Hb_000209_110 Hb_182680_010--Hb_000209_110 Hb_009467_040 Hb_009467_040 Hb_182680_010--Hb_009467_040 Hb_182680_010--Hb_003428_100 Hb_000204_030 Hb_000204_030 Hb_003428_100--Hb_000204_030 Hb_029510_110 Hb_029510_110 Hb_003428_100--Hb_029510_110 Hb_001104_200 Hb_001104_200 Hb_003428_100--Hb_001104_200 Hb_002046_100 Hb_002046_100 Hb_003428_100--Hb_002046_100 Hb_002325_020 Hb_002325_020 Hb_003428_100--Hb_002325_020 Hb_112203_010 Hb_112203_010 Hb_005389_190--Hb_112203_010 Hb_003517_010 Hb_003517_010 Hb_005389_190--Hb_003517_010 Hb_005389_190--Hb_000343_100 Hb_144004_010 Hb_144004_010 Hb_005389_190--Hb_144004_010 Hb_002006_140 Hb_002006_140 Hb_005389_190--Hb_002006_140 Hb_000975_150 Hb_000975_150 Hb_002233_040--Hb_000975_150 Hb_000061_090 Hb_000061_090 Hb_002233_040--Hb_000061_090 Hb_002233_040--Hb_005389_190 Hb_046994_010 Hb_046994_010 Hb_002233_040--Hb_046994_010 Hb_107201_010 Hb_107201_010 Hb_002233_040--Hb_107201_010 Hb_004041_100 Hb_004041_100 Hb_000181_020--Hb_004041_100 Hb_000625_030 Hb_000625_030 Hb_000181_020--Hb_000625_030 Hb_000181_020--Hb_000347_110 Hb_011360_060 Hb_011360_060 Hb_000181_020--Hb_011360_060 Hb_006846_120 Hb_006846_120 Hb_000181_020--Hb_006846_120 Hb_001500_070 Hb_001500_070 Hb_000181_020--Hb_001500_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.443955 0.523367 0.273271 0.388986 0.193051 0.457546
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.723218 0.335886 0.161095 6.81704 1.17821

CAGE analysis