Hb_004143_150

Information

Type transcription factor
Description TF Family: C2C2-GATA
Location Contig4143: 178977-192974
Sequence    

Annotation

kegg
ID rcu:RCOM_0482890
description GATA transcription factor, putative
nr
ID XP_012068046.1
description PREDICTED: GATA transcription factor 24-like isoform X6 [Jatropha curcas]
swissprot
ID Q9LRH6
description GATA transcription factor 25 OS=Arabidopsis thaliana GN=GATA25 PE=2 SV=2
trembl
ID A0A067L2M7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15905 PE=4 SV=1
Gene Ontology
ID GO:0003700
description gata transcription factor 24-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41064: 179036-185127 , PASA_asmbl_41066: 187560-193087 , PASA_asmbl_41067: 189419-193087
cDNA
(Sanger)
(ID:Location)		 034_N24.ab1: 179036-181168

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004143_150 0.0 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X6 [Jatropha curcas]
2 Hb_004899_370 0.0491910896 - - hypothetical protein CICLE_v10009013mg [Citrus clementina]
3 Hb_000001_060 0.0509428472 - - PREDICTED: N(6)-adenine-specific DNA methyltransferase 2 [Jatropha curcas]
4 Hb_000920_110 0.0597926781 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Jatropha curcas]
5 Hb_004127_020 0.0643246297 - - PREDICTED: probable RNA 3'-terminal phosphate cyclase-like protein isoform X1 [Populus euphratica]
6 Hb_006615_240 0.0652921584 - - PREDICTED: uncharacterized protein LOC105640673 [Jatropha curcas]
7 Hb_004102_110 0.0678092434 - - Monothiol glutaredoxin-4, putative [Ricinus communis]
8 Hb_000327_060 0.0679755369 - - PREDICTED: uncharacterized protein LOC105635258 isoform X2 [Jatropha curcas]
9 Hb_000261_140 0.0680220092 - - -
10 Hb_158445_010 0.0689307195 - - PREDICTED: cysteine protease ATG4-like isoform X1 [Jatropha curcas]
11 Hb_000107_160 0.0690558402 - - PREDICTED: uncharacterized protein LOC105645584 [Jatropha curcas]
12 Hb_002676_090 0.0695553885 - - PREDICTED: protein TIC 22-like, chloroplastic [Jatropha curcas]
13 Hb_003151_040 0.069608992 transcription factor TF Family: Alfin-like zinc finger family protein [Populus trichocarpa]
14 Hb_000527_060 0.0701549873 - - Protein C20orf11, putative [Ricinus communis]
15 Hb_000479_090 0.07132269 - - PREDICTED: zinc finger RNA-binding protein [Jatropha curcas]
16 Hb_023278_020 0.0718054835 - - Peroxin 3 isoform 1 [Theobroma cacao]
17 Hb_005846_040 0.073049834 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 [Populus euphratica]
18 Hb_001123_130 0.0734223261 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
19 Hb_004109_170 0.0745827375 - - PREDICTED: probable ribokinase [Jatropha curcas]
20 Hb_000310_020 0.0755864843 - - hypothetical protein JCGZ_20797 [Jatropha curcas]

Gene co-expression network

sample Hb_004143_150 Hb_004143_150 Hb_004899_370 Hb_004899_370 Hb_004143_150--Hb_004899_370 Hb_000001_060 Hb_000001_060 Hb_004143_150--Hb_000001_060 Hb_000920_110 Hb_000920_110 Hb_004143_150--Hb_000920_110 Hb_004127_020 Hb_004127_020 Hb_004143_150--Hb_004127_020 Hb_006615_240 Hb_006615_240 Hb_004143_150--Hb_006615_240 Hb_004102_110 Hb_004102_110 Hb_004143_150--Hb_004102_110 Hb_023278_020 Hb_023278_020 Hb_004899_370--Hb_023278_020 Hb_004899_370--Hb_000001_060 Hb_003151_040 Hb_003151_040 Hb_004899_370--Hb_003151_040 Hb_004899_370--Hb_004127_020 Hb_009615_070 Hb_009615_070 Hb_004899_370--Hb_009615_070 Hb_001476_080 Hb_001476_080 Hb_000001_060--Hb_001476_080 Hb_000001_060--Hb_003151_040 Hb_000005_090 Hb_000005_090 Hb_000001_060--Hb_000005_090 Hb_001766_060 Hb_001766_060 Hb_000001_060--Hb_001766_060 Hb_003226_100 Hb_003226_100 Hb_000920_110--Hb_003226_100 Hb_002056_050 Hb_002056_050 Hb_000920_110--Hb_002056_050 Hb_001484_070 Hb_001484_070 Hb_000920_110--Hb_001484_070 Hb_010175_040 Hb_010175_040 Hb_000920_110--Hb_010175_040 Hb_000479_090 Hb_000479_090 Hb_000920_110--Hb_000479_090 Hb_001616_040 Hb_001616_040 Hb_000920_110--Hb_001616_040 Hb_004127_020--Hb_000479_090 Hb_000265_050 Hb_000265_050 Hb_004127_020--Hb_000265_050 Hb_002798_020 Hb_002798_020 Hb_004127_020--Hb_002798_020 Hb_000840_180 Hb_000840_180 Hb_004127_020--Hb_000840_180 Hb_003582_060 Hb_003582_060 Hb_006615_240--Hb_003582_060 Hb_010098_050 Hb_010098_050 Hb_006615_240--Hb_010098_050 Hb_000390_300 Hb_000390_300 Hb_006615_240--Hb_000390_300 Hb_004109_170 Hb_004109_170 Hb_006615_240--Hb_004109_170 Hb_000003_230 Hb_000003_230 Hb_006615_240--Hb_000003_230 Hb_001341_150 Hb_001341_150 Hb_006615_240--Hb_001341_150 Hb_024439_010 Hb_024439_010 Hb_004102_110--Hb_024439_010 Hb_000016_160 Hb_000016_160 Hb_004102_110--Hb_000016_160 Hb_026527_050 Hb_026527_050 Hb_004102_110--Hb_026527_050 Hb_004102_110--Hb_009615_070 Hb_000527_060 Hb_000527_060 Hb_004102_110--Hb_000527_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.839 12.8676 14.0047 16.2133 12.357 14.5181
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.642 40.6482 22.5762 12.5482 14.4486

CAGE analysis