Hb_004147_070

Information

Type -
Description -
Location Contig4147: 86355-90087
Sequence    

Annotation

kegg
ID tcc:TCM_034545
description Rhamnogalacturonate lyase family protein
nr
ID XP_012068060.1
description PREDICTED: probable rhamnogalacturonate lyase B [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L2N7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15915 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41083: 86778-87339 , PASA_asmbl_41084: 88080-88380 , PASA_asmbl_41085: 89172-89791
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004147_070 0.0 - - PREDICTED: probable rhamnogalacturonate lyase B [Jatropha curcas]
2 Hb_001902_200 0.1411259115 - - PREDICTED: tubulin beta-1 chain [Eucalyptus grandis]
3 Hb_001366_170 0.1464510874 - - PREDICTED: uncharacterized protein C594.04c [Jatropha curcas]
4 Hb_008725_070 0.1527659933 - - Cellulose synthase A catalytic subunit 3 [UDP-forming], putative [Ricinus communis]
5 Hb_000540_160 0.1624501081 - - PREDICTED: mitogen-activated protein kinase homolog NTF6 [Jatropha curcas]
6 Hb_003408_010 0.1669453683 - - fructokinase [Manihot esculenta]
7 Hb_001401_040 0.1720777964 - - PREDICTED: protein CYPRO4 [Jatropha curcas]
8 Hb_000011_310 0.1728055686 - - PREDICTED: uncharacterized protein LOC105631327 [Jatropha curcas]
9 Hb_000028_490 0.1772072117 - - calmodulin-like protein 6a [Populus trichocarpa]
10 Hb_000960_090 0.1807759188 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003055_090 0.1825476569 - - PREDICTED: uncharacterized protein LOC105649490 [Jatropha curcas]
12 Hb_000023_110 0.1867279059 - - PREDICTED: probable methyltransferase PMT21 [Jatropha curcas]
13 Hb_017439_010 0.1907044799 - - putative actin-97 protein [Linum usitatissimum]
14 Hb_009079_040 0.1917031047 - - BnaA02g30070D [Brassica napus]
15 Hb_001780_030 0.1917215743 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
16 Hb_001459_090 0.1929932686 - - unnamed protein product [Vitis vinifera]
17 Hb_031284_030 0.1959298971 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002498_030 0.1981136433 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003813_060 0.1984743546 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003728_110 0.1988627508 - - PREDICTED: calmodulin-like protein 3 [Populus euphratica]

Gene co-expression network

sample Hb_004147_070 Hb_004147_070 Hb_001902_200 Hb_001902_200 Hb_004147_070--Hb_001902_200 Hb_001366_170 Hb_001366_170 Hb_004147_070--Hb_001366_170 Hb_008725_070 Hb_008725_070 Hb_004147_070--Hb_008725_070 Hb_000540_160 Hb_000540_160 Hb_004147_070--Hb_000540_160 Hb_003408_010 Hb_003408_010 Hb_004147_070--Hb_003408_010 Hb_001401_040 Hb_001401_040 Hb_004147_070--Hb_001401_040 Hb_001902_200--Hb_001366_170 Hb_003813_060 Hb_003813_060 Hb_001902_200--Hb_003813_060 Hb_001369_630 Hb_001369_630 Hb_001902_200--Hb_001369_630 Hb_000086_290 Hb_000086_290 Hb_001902_200--Hb_000086_290 Hb_001902_200--Hb_003408_010 Hb_053709_040 Hb_053709_040 Hb_001366_170--Hb_053709_040 Hb_003207_150 Hb_003207_150 Hb_001366_170--Hb_003207_150 Hb_002490_030 Hb_002490_030 Hb_001366_170--Hb_002490_030 Hb_006351_020 Hb_006351_020 Hb_001366_170--Hb_006351_020 Hb_004032_210 Hb_004032_210 Hb_001366_170--Hb_004032_210 Hb_001780_030 Hb_001780_030 Hb_008725_070--Hb_001780_030 Hb_006289_020 Hb_006289_020 Hb_008725_070--Hb_006289_020 Hb_008725_070--Hb_000540_160 Hb_000028_490 Hb_000028_490 Hb_008725_070--Hb_000028_490 Hb_000960_090 Hb_000960_090 Hb_008725_070--Hb_000960_090 Hb_002900_180 Hb_002900_180 Hb_000540_160--Hb_002900_180 Hb_003728_110 Hb_003728_110 Hb_000540_160--Hb_003728_110 Hb_000540_160--Hb_000028_490 Hb_124951_020 Hb_124951_020 Hb_000540_160--Hb_124951_020 Hb_000540_160--Hb_002490_030 Hb_000932_050 Hb_000932_050 Hb_003408_010--Hb_000932_050 Hb_001450_040 Hb_001450_040 Hb_003408_010--Hb_001450_040 Hb_003408_010--Hb_001401_040 Hb_000023_110 Hb_000023_110 Hb_003408_010--Hb_000023_110 Hb_000108_240 Hb_000108_240 Hb_003408_010--Hb_000108_240 Hb_008725_080 Hb_008725_080 Hb_003408_010--Hb_008725_080 Hb_003055_090 Hb_003055_090 Hb_001401_040--Hb_003055_090 Hb_001408_170 Hb_001408_170 Hb_001401_040--Hb_001408_170 Hb_004650_030 Hb_004650_030 Hb_001401_040--Hb_004650_030 Hb_017439_010 Hb_017439_010 Hb_001401_040--Hb_017439_010 Hb_001268_160 Hb_001268_160 Hb_001401_040--Hb_001268_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0783819 0.192681 2.14585 3.44937 0.262988 0.0298178
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.250301 0.196905 0.683739 0.629862 0.526855

CAGE analysis