Hb_004150_020

Information

Type -
Description -
Location Contig4150: 65282-67851
Sequence    

Annotation

kegg
ID tcc:TCM_037518
description Subtilase family protein
nr
ID XP_012078825.1
description PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
swissprot
ID O65351
description Subtilisin-like protease SBT1.7 OS=Arabidopsis thaliana GN=SBT1.7 PE=1 SV=1
trembl
ID A0A061GT12
description Subtilase family protein OS=Theobroma cacao GN=TCM_037518 PE=4 SV=1
Gene Ontology
ID GO:0005618
description subtilisin-like protease

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41095: 65278-67689
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004150_020 0.0 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
2 Hb_003053_090 0.0402858967 - - PREDICTED: carbonic anhydrase, chloroplastic-like [Jatropha curcas]
3 Hb_020859_010 0.0407765275 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X6 [Populus euphratica]
4 Hb_015981_010 0.0476813204 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_000893_040 0.0522500268 transcription factor TF Family: bHLH hypothetical protein POPTR_0011s05320g [Populus trichocarpa]
6 Hb_008489_030 0.0544398348 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
7 Hb_000977_260 0.0599121125 - - hypothetical protein CISIN_1g047084mg, partial [Citrus sinensis]
8 Hb_000349_150 0.0613919448 - - PREDICTED: geraniol 8-hydroxylase-like [Jatropha curcas]
9 Hb_001210_110 0.0621238393 - - PREDICTED: gibberellin 3-beta-dioxygenase 1 [Jatropha curcas]
10 Hb_027751_070 0.0630956749 transcription factor TF Family: C2C2-CO-like transcription factor, putative [Ricinus communis]
11 Hb_006040_090 0.0634686099 - - ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Hevea brasiliensis]
12 Hb_000083_010 0.0641911803 - - -
13 Hb_004855_030 0.0703843162 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
14 Hb_000922_110 0.071761402 transcription factor TF Family: MYB PREDICTED: transcription factor WER-like [Jatropha curcas]
15 Hb_002040_070 0.0720642291 - - -
16 Hb_000398_110 0.0745944239 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 4-like [Populus euphratica]
17 Hb_006495_030 0.0750849378 - - PREDICTED: isoflavone 2'-hydroxylase-like [Vitis vinifera]
18 Hb_003251_010 0.0756694768 - - hypothetical protein MIMGU_mgv1a025126mg [Erythranthe guttata]
19 Hb_011689_070 0.0759874781 - - PREDICTED: pyruvate, phosphate dikinase, chloroplastic [Jatropha curcas]
20 Hb_020805_090 0.0770998177 - - glyceraldehyde 3-phosphate dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_004150_020 Hb_004150_020 Hb_003053_090 Hb_003053_090 Hb_004150_020--Hb_003053_090 Hb_020859_010 Hb_020859_010 Hb_004150_020--Hb_020859_010 Hb_015981_010 Hb_015981_010 Hb_004150_020--Hb_015981_010 Hb_000893_040 Hb_000893_040 Hb_004150_020--Hb_000893_040 Hb_008489_030 Hb_008489_030 Hb_004150_020--Hb_008489_030 Hb_000977_260 Hb_000977_260 Hb_004150_020--Hb_000977_260 Hb_003053_090--Hb_020859_010 Hb_003053_090--Hb_015981_010 Hb_002040_070 Hb_002040_070 Hb_003053_090--Hb_002040_070 Hb_027751_070 Hb_027751_070 Hb_003053_090--Hb_027751_070 Hb_006040_090 Hb_006040_090 Hb_003053_090--Hb_006040_090 Hb_020859_010--Hb_015981_010 Hb_020859_010--Hb_000893_040 Hb_020859_010--Hb_008489_030 Hb_020859_010--Hb_027751_070 Hb_015981_010--Hb_008489_030 Hb_015981_010--Hb_000893_040 Hb_002997_060 Hb_002997_060 Hb_015981_010--Hb_002997_060 Hb_000893_040--Hb_008489_030 Hb_000893_040--Hb_000977_260 Hb_003251_010 Hb_003251_010 Hb_000893_040--Hb_003251_010 Hb_000893_040--Hb_002997_060 Hb_008489_030--Hb_002997_060 Hb_008489_030--Hb_000977_260 Hb_008489_030--Hb_003251_010 Hb_000977_260--Hb_003251_010 Hb_003208_010 Hb_003208_010 Hb_000977_260--Hb_003208_010 Hb_000398_110 Hb_000398_110 Hb_000977_260--Hb_000398_110 Hb_000977_260--Hb_020859_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0143397 2.61575 0.857826 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0358822 0 0 0.0336402 22.3791

CAGE analysis