Hb_004153_040

Information

Type -
Description -
Location Contig4153: 29334-33713
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044250.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID Q7LHG5
description Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004153_040 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_015852_010 0.0034512989 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
3 Hb_017279_020 0.009993481 - - protein MOTHER of FT and TF 1 [Jatropha curcas]
4 Hb_001232_030 0.0155869664 - - hypothetical protein POPTR_0001s18270g [Populus trichocarpa]
5 Hb_034661_050 0.0227845932 - - PREDICTED: zinc finger MYM-type protein 1-like, partial [Malus domestica]
6 Hb_091368_010 0.0261357346 - - gibberellin 20-oxidase, putative [Ricinus communis]
7 Hb_025519_010 0.02922674 - - PREDICTED: uncharacterized protein LOC103485710 [Cucumis melo]
8 Hb_060231_020 0.0312597591 - - PREDICTED: peroxisomal membrane protein PMP22 [Jatropha curcas]
9 Hb_001544_010 0.0342922785 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000166_010 0.0392194488 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
11 Hb_082864_010 0.0394720944 - - JHL25H03.10 [Jatropha curcas]
12 Hb_150263_030 0.0467885069 - - conserved hypothetical protein [Ricinus communis]
13 Hb_042666_010 0.0513467706 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
14 Hb_000108_010 0.0516166398 - - hypothetical protein POPTR_0016s06140g, partial [Populus trichocarpa]
15 Hb_004375_040 0.0516218766 - - hypothetical protein JCGZ_13965 [Jatropha curcas]
16 Hb_003589_040 0.0526721803 - - hypothetical protein JCGZ_01204 [Jatropha curcas]
17 Hb_000940_090 0.0592438003 - - hypothetical protein CISIN_1g046520mg [Citrus sinensis]
18 Hb_000967_070 0.0598365181 - - rubber peroxidase 1 [Hevea brasiliensis]
19 Hb_000156_020 0.0610911047 - - PREDICTED: la-related protein 6A [Jatropha curcas]
20 Hb_003176_030 0.0610911047 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Solanum lycopersicum]

Gene co-expression network

sample Hb_004153_040 Hb_004153_040 Hb_015852_010 Hb_015852_010 Hb_004153_040--Hb_015852_010 Hb_017279_020 Hb_017279_020 Hb_004153_040--Hb_017279_020 Hb_001232_030 Hb_001232_030 Hb_004153_040--Hb_001232_030 Hb_034661_050 Hb_034661_050 Hb_004153_040--Hb_034661_050 Hb_091368_010 Hb_091368_010 Hb_004153_040--Hb_091368_010 Hb_025519_010 Hb_025519_010 Hb_004153_040--Hb_025519_010 Hb_015852_010--Hb_001232_030 Hb_015852_010--Hb_017279_020 Hb_015852_010--Hb_091368_010 Hb_015852_010--Hb_034661_050 Hb_001544_010 Hb_001544_010 Hb_015852_010--Hb_001544_010 Hb_017279_020--Hb_034661_050 Hb_017279_020--Hb_025519_010 Hb_060231_020 Hb_060231_020 Hb_017279_020--Hb_060231_020 Hb_017279_020--Hb_001232_030 Hb_001232_030--Hb_091368_010 Hb_001232_030--Hb_001544_010 Hb_000166_010 Hb_000166_010 Hb_001232_030--Hb_000166_010 Hb_082864_010 Hb_082864_010 Hb_001232_030--Hb_082864_010 Hb_034661_050--Hb_025519_010 Hb_034661_050--Hb_060231_020 Hb_150263_030 Hb_150263_030 Hb_034661_050--Hb_150263_030 Hb_091368_010--Hb_001544_010 Hb_091368_010--Hb_000166_010 Hb_091368_010--Hb_082864_010 Hb_042666_010 Hb_042666_010 Hb_091368_010--Hb_042666_010 Hb_025519_010--Hb_060231_020 Hb_025519_010--Hb_150263_030 Hb_000108_010 Hb_000108_010 Hb_025519_010--Hb_000108_010 Hb_004375_040 Hb_004375_040 Hb_025519_010--Hb_004375_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0103578 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0066346 0

CAGE analysis