Hb_004154_010

Information

Type -
Description -
Location Contig4154: 7778-10487
Sequence    

Annotation

kegg
ID rcu:RCOM_0867270
description Rop guanine nucleotide exchange factor, putative
nr
ID XP_002519922.1
description Rop guanine nucleotide exchange factor, putative [Ricinus communis]
swissprot
ID Q56WM6
description Rop guanine nucleotide exchange factor 14 OS=Arabidopsis thaliana GN=ROPGEF14 PE=1 SV=1
trembl
ID B9S1Q7
description Rop guanine nucleotide exchange factor, putative OS=Ricinus communis GN=RCOM_0867270 PE=4 SV=1
Gene Ontology
ID GO:0005089
description rop guanine nucleotide exchange factor 14

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004154_010 0.0 - - Rop guanine nucleotide exchange factor, putative [Ricinus communis]
2 Hb_005599_010 0.0435631027 - - Protein MLO, putative [Ricinus communis]
3 Hb_014549_010 0.078394515 - - PREDICTED: uncharacterized protein LOC101512634 [Cicer arietinum]
4 Hb_185830_090 0.1038719674 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003226_060 0.1092003502 - - Pectinesterase-2 precursor, putative [Ricinus communis]
6 Hb_036602_010 0.1104536995 - - PREDICTED: wall-associated receptor kinase 2-like [Jatropha curcas]
7 Hb_003050_170 0.1174988822 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000397_170 0.1215385741 - - conserved hypothetical protein [Ricinus communis]
9 Hb_006197_010 0.1254606637 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Jatropha curcas]
10 Hb_000635_190 0.1381535748 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103322127 [Prunus mume]
11 Hb_002540_100 0.1440579271 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
12 Hb_006721_060 0.1447666683 - - RnaseH (mitochondrion) [Malus domestica]
13 Hb_096878_010 0.1474180084 - - hypothetical protein POPTR_0112s002001g, partial [Populus trichocarpa]
14 Hb_003119_040 0.148965248 - - PREDICTED: classical arabinogalactan protein 1-like [Populus euphratica]
15 Hb_025163_020 0.1515295465 - - PREDICTED: probable terpene synthase 13 [Jatropha curcas]
16 Hb_005701_100 0.1521544504 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
17 Hb_008215_020 0.1545911692 - - ankyrin repeat-containing protein, putative [Ricinus communis]
18 Hb_004297_050 0.1548495811 - - cytochrome P450, putative [Ricinus communis]
19 Hb_003489_010 0.1586616845 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
20 Hb_005217_070 0.1628719307 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004154_010 Hb_004154_010 Hb_005599_010 Hb_005599_010 Hb_004154_010--Hb_005599_010 Hb_014549_010 Hb_014549_010 Hb_004154_010--Hb_014549_010 Hb_185830_090 Hb_185830_090 Hb_004154_010--Hb_185830_090 Hb_003226_060 Hb_003226_060 Hb_004154_010--Hb_003226_060 Hb_036602_010 Hb_036602_010 Hb_004154_010--Hb_036602_010 Hb_003050_170 Hb_003050_170 Hb_004154_010--Hb_003050_170 Hb_005599_010--Hb_003226_060 Hb_000397_170 Hb_000397_170 Hb_005599_010--Hb_000397_170 Hb_002540_100 Hb_002540_100 Hb_005599_010--Hb_002540_100 Hb_005599_010--Hb_014549_010 Hb_006197_010 Hb_006197_010 Hb_005599_010--Hb_006197_010 Hb_014549_010--Hb_036602_010 Hb_003489_010 Hb_003489_010 Hb_014549_010--Hb_003489_010 Hb_005701_100 Hb_005701_100 Hb_014549_010--Hb_005701_100 Hb_014549_010--Hb_185830_090 Hb_006721_060 Hb_006721_060 Hb_014549_010--Hb_006721_060 Hb_096878_010 Hb_096878_010 Hb_185830_090--Hb_096878_010 Hb_185830_090--Hb_003050_170 Hb_000635_190 Hb_000635_190 Hb_185830_090--Hb_000635_190 Hb_133508_020 Hb_133508_020 Hb_185830_090--Hb_133508_020 Hb_185830_090--Hb_006721_060 Hb_003226_060--Hb_000397_170 Hb_001754_100 Hb_001754_100 Hb_003226_060--Hb_001754_100 Hb_000574_180 Hb_000574_180 Hb_003226_060--Hb_000574_180 Hb_150745_010 Hb_150745_010 Hb_003226_060--Hb_150745_010 Hb_036602_010--Hb_003489_010 Hb_000483_120 Hb_000483_120 Hb_036602_010--Hb_000483_120 Hb_036602_010--Hb_005701_100 Hb_036602_010--Hb_006197_010 Hb_003050_170--Hb_000635_190 Hb_003050_170--Hb_096878_010 Hb_003050_170--Hb_006721_060 Hb_008725_030 Hb_008725_030 Hb_003050_170--Hb_008725_030 Hb_003968_010 Hb_003968_010 Hb_003050_170--Hb_003968_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0443709 0.153951 0.122703 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0191673 0

CAGE analysis