Hb_004155_010

Information

Type -
Description -
Location Contig4155: 46080-49959
Sequence    

Annotation

kegg
ID cic:CICLE_v10008260mg
description hypothetical protein
nr
ID XP_012077445.1
description PREDICTED: la protein 1 [Jatropha curcas]
swissprot
ID Q93ZV7
description La protein 1 OS=Arabidopsis thaliana GN=LA1 PE=1 SV=1
trembl
ID A0A067KPM5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07781 PE=4 SV=1
Gene Ontology
ID GO:0005634
description la protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41099: 48728-49991
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004155_010 0.0 - - PREDICTED: la protein 1 [Jatropha curcas]
2 Hb_030736_100 0.072271867 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000160_210 0.0752074744 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000836_440 0.0752632153 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_077562_050 0.0777429699 transcription factor TF Family: NF-YC PREDICTED: dr1-associated corepressor homolog [Jatropha curcas]
6 Hb_000453_170 0.0778648867 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_004724_060 0.0785635779 - - PREDICTED: uncharacterized protein LOC105640155 isoform X1 [Jatropha curcas]
8 Hb_000502_050 0.0789085771 transcription factor TF Family: HSF Heat shock factor protein HSF8, putative [Ricinus communis]
9 Hb_004221_020 0.0811729619 - - protein binding protein, putative [Ricinus communis]
10 Hb_000920_060 0.0812963686 - - PREDICTED: intron-binding protein aquarius [Jatropha curcas]
11 Hb_000879_200 0.0823564735 - - PREDICTED: A-kinase anchor protein 17A [Jatropha curcas]
12 Hb_005188_050 0.0837028695 - - PREDICTED: DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
13 Hb_000827_070 0.0848162697 desease resistance Gene Name: NB-ARC PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
14 Hb_000289_060 0.0852111764 - - PREDICTED: uncharacterized protein At1g18480 [Jatropha curcas]
15 Hb_011316_050 0.0881107745 - - hypothetical protein CICLE_v10004643mg [Citrus clementina]
16 Hb_003938_080 0.0881576352 - - PREDICTED: uncharacterized protein LOC105644554 [Jatropha curcas]
17 Hb_006316_040 0.0890372726 - - PREDICTED: pentatricopeptide repeat-containing protein At5g16860 [Jatropha curcas]
18 Hb_002835_370 0.0894636444 - - histone deacetylase 1, 2 ,3, putative [Ricinus communis]
19 Hb_000926_190 0.089643045 - - PREDICTED: 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
20 Hb_000072_220 0.0900324605 - - PREDICTED: pentatricopeptide repeat-containing protein At3g02490, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_004155_010 Hb_004155_010 Hb_030736_100 Hb_030736_100 Hb_004155_010--Hb_030736_100 Hb_000160_210 Hb_000160_210 Hb_004155_010--Hb_000160_210 Hb_000836_440 Hb_000836_440 Hb_004155_010--Hb_000836_440 Hb_077562_050 Hb_077562_050 Hb_004155_010--Hb_077562_050 Hb_000453_170 Hb_000453_170 Hb_004155_010--Hb_000453_170 Hb_004724_060 Hb_004724_060 Hb_004155_010--Hb_004724_060 Hb_003939_050 Hb_003939_050 Hb_030736_100--Hb_003939_050 Hb_003025_110 Hb_003025_110 Hb_030736_100--Hb_003025_110 Hb_000883_020 Hb_000883_020 Hb_030736_100--Hb_000883_020 Hb_000575_040 Hb_000575_040 Hb_030736_100--Hb_000575_040 Hb_002271_030 Hb_002271_030 Hb_030736_100--Hb_002271_030 Hb_000879_200 Hb_000879_200 Hb_030736_100--Hb_000879_200 Hb_007007_060 Hb_007007_060 Hb_000160_210--Hb_007007_060 Hb_003794_010 Hb_003794_010 Hb_000160_210--Hb_003794_010 Hb_004100_080 Hb_004100_080 Hb_000160_210--Hb_004100_080 Hb_023386_020 Hb_023386_020 Hb_000160_210--Hb_023386_020 Hb_000009_090 Hb_000009_090 Hb_000160_210--Hb_000009_090 Hb_079526_030 Hb_079526_030 Hb_000160_210--Hb_079526_030 Hb_165928_020 Hb_165928_020 Hb_000836_440--Hb_165928_020 Hb_012098_110 Hb_012098_110 Hb_000836_440--Hb_012098_110 Hb_000926_190 Hb_000926_190 Hb_000836_440--Hb_000926_190 Hb_002084_020 Hb_002084_020 Hb_000836_440--Hb_002084_020 Hb_000836_440--Hb_023386_020 Hb_000289_060 Hb_000289_060 Hb_077562_050--Hb_000289_060 Hb_000538_270 Hb_000538_270 Hb_077562_050--Hb_000538_270 Hb_000010_400 Hb_000010_400 Hb_077562_050--Hb_000010_400 Hb_077562_050--Hb_000453_170 Hb_027295_050 Hb_027295_050 Hb_077562_050--Hb_027295_050 Hb_011316_050 Hb_011316_050 Hb_000453_170--Hb_011316_050 Hb_002496_030 Hb_002496_030 Hb_000453_170--Hb_002496_030 Hb_006316_040 Hb_006316_040 Hb_000453_170--Hb_006316_040 Hb_004221_020 Hb_004221_020 Hb_000453_170--Hb_004221_020 Hb_000827_070 Hb_000827_070 Hb_000453_170--Hb_000827_070 Hb_000453_170--Hb_000289_060 Hb_001797_050 Hb_001797_050 Hb_004724_060--Hb_001797_050 Hb_000577_010 Hb_000577_010 Hb_004724_060--Hb_000577_010 Hb_007163_090 Hb_007163_090 Hb_004724_060--Hb_007163_090 Hb_000820_170 Hb_000820_170 Hb_004724_060--Hb_000820_170 Hb_008500_010 Hb_008500_010 Hb_004724_060--Hb_008500_010 Hb_123352_020 Hb_123352_020 Hb_004724_060--Hb_123352_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.69759 1.84779 1.60348 0.601968 2.48022 3.02095
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.55161 1.94086 2.39993 1.77527 1.77503

CAGE analysis