Hb_004155_020

Information

Type transcription factor
Description TF Family: MYB
Location Contig4155: 53939-60707
Sequence    

Annotation

kegg
ID rcu:RCOM_0802980
description myb, putative
nr
ID XP_002516567.1
description myb, putative [Ricinus communis]
swissprot
ID Q9S7G7
description Myb-related protein 3R-1 OS=Arabidopsis thaliana GN=MYB3R-1 PE=2 SV=1
trembl
ID B9RS48
description Myb, putative OS=Ricinus communis GN=RCOM_0802980 PE=4 SV=1
Gene Ontology
ID GO:0003677
description myb-related protein 3r-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41100: 53985-58543 , PASA_asmbl_41101: 59193-60866
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004155_020 0.0 transcription factor TF Family: MYB myb, putative [Ricinus communis]
2 Hb_001232_090 0.1215770524 - - PREDICTED: regulator of telomere elongation helicase 1 homolog [Jatropha curcas]
3 Hb_005901_030 0.1226845698 - - PREDICTED: phragmoplast orienting kinesin 2 isoform X1 [Jatropha curcas]
4 Hb_000526_010 0.1251365983 - - PREDICTED: uroporphyrinogen-III C-methyltransferase [Jatropha curcas]
5 Hb_000260_650 0.1311220476 - - PREDICTED: protein PFC0760c [Jatropha curcas]
6 Hb_143813_020 0.1326929396 transcription factor TF Family: WRKY hypothetical protein POPTR_0006s10950g [Populus trichocarpa]
7 Hb_000563_440 0.1335246435 - - PREDICTED: condensin-2 complex subunit H2 isoform X2 [Jatropha curcas]
8 Hb_004163_030 0.138066476 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A10 [Jatropha curcas]
9 Hb_011828_040 0.1413293811 - - PREDICTED: uncharacterized protein LOC105642173 isoform X2 [Jatropha curcas]
10 Hb_002205_140 0.1438975939 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2b [Jatropha curcas]
11 Hb_006951_030 0.1499424368 - - PREDICTED: protein MCM10 homolog [Jatropha curcas]
12 Hb_005903_020 0.1515154594 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]
13 Hb_000960_090 0.1532649291 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000288_090 0.1548465132 - - unnamed protein product [Vitis vinifera]
15 Hb_005271_140 0.155248016 transcription factor TF Family: LIM Pollen-specific protein SF3 [Morus notabilis]
16 Hb_000088_240 0.1557725744 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
17 Hb_029510_130 0.1565644449 - - PREDICTED: malonate--CoA ligase [Jatropha curcas]
18 Hb_001863_160 0.1598919538 - - PREDICTED: 14-3-3-like protein [Jatropha curcas]
19 Hb_003894_030 0.1612283095 - - plant sec1, putative [Ricinus communis]
20 Hb_007426_220 0.1630645882 - - Endoplasmic oxidoreductin-1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_004155_020 Hb_004155_020 Hb_001232_090 Hb_001232_090 Hb_004155_020--Hb_001232_090 Hb_005901_030 Hb_005901_030 Hb_004155_020--Hb_005901_030 Hb_000526_010 Hb_000526_010 Hb_004155_020--Hb_000526_010 Hb_000260_650 Hb_000260_650 Hb_004155_020--Hb_000260_650 Hb_143813_020 Hb_143813_020 Hb_004155_020--Hb_143813_020 Hb_000563_440 Hb_000563_440 Hb_004155_020--Hb_000563_440 Hb_005903_020 Hb_005903_020 Hb_001232_090--Hb_005903_020 Hb_013405_070 Hb_013405_070 Hb_001232_090--Hb_013405_070 Hb_005271_140 Hb_005271_140 Hb_001232_090--Hb_005271_140 Hb_000406_030 Hb_000406_030 Hb_001232_090--Hb_000406_030 Hb_011381_040 Hb_011381_040 Hb_001232_090--Hb_011381_040 Hb_004957_020 Hb_004957_020 Hb_005901_030--Hb_004957_020 Hb_005901_030--Hb_000260_650 Hb_000211_100 Hb_000211_100 Hb_005901_030--Hb_000211_100 Hb_021495_010 Hb_021495_010 Hb_005901_030--Hb_021495_010 Hb_000640_050 Hb_000640_050 Hb_005901_030--Hb_000640_050 Hb_004163_030 Hb_004163_030 Hb_000526_010--Hb_004163_030 Hb_011828_040 Hb_011828_040 Hb_000526_010--Hb_011828_040 Hb_007426_220 Hb_007426_220 Hb_000526_010--Hb_007426_220 Hb_002783_220 Hb_002783_220 Hb_000526_010--Hb_002783_220 Hb_002662_040 Hb_002662_040 Hb_000526_010--Hb_002662_040 Hb_000960_090 Hb_000960_090 Hb_000260_650--Hb_000960_090 Hb_000288_090 Hb_000288_090 Hb_000260_650--Hb_000288_090 Hb_000668_060 Hb_000668_060 Hb_000260_650--Hb_000668_060 Hb_006970_130 Hb_006970_130 Hb_000260_650--Hb_006970_130 Hb_000684_100 Hb_000684_100 Hb_143813_020--Hb_000684_100 Hb_001863_160 Hb_001863_160 Hb_143813_020--Hb_001863_160 Hb_001369_470 Hb_001369_470 Hb_143813_020--Hb_001369_470 Hb_001214_190 Hb_001214_190 Hb_143813_020--Hb_001214_190 Hb_143813_020--Hb_005903_020 Hb_002540_070 Hb_002540_070 Hb_000563_440--Hb_002540_070 Hb_000684_120 Hb_000684_120 Hb_000563_440--Hb_000684_120 Hb_002235_380 Hb_002235_380 Hb_000563_440--Hb_002235_380 Hb_000563_440--Hb_005271_140 Hb_000563_440--Hb_001863_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.33035 1.46747 11.0709 5.24682 0.985588 0.337982
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.806883 1.19939 1.87364 2.05742 1.5299

CAGE analysis