Hb_004156_040

Information

Type -
Description -
Location Contig4156: 50693-55083
Sequence    

Annotation

kegg
ID pop:POPTR_0019s11110g
description POPTRDRAFT_738825; hypothetical protein
nr
ID XP_011004001.1
description PREDICTED: uncharacterized protein LOC105110611 [Populus euphratica]
swissprot
ID -
description -
trembl
ID A9P8B4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s11110g PE=2 SV=1
Gene Ontology
ID GO:0006511
description #NAME?

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41102: 50761-55233 , PASA_asmbl_41104: 53282-53423 , PASA_asmbl_41105: 52503-52840 , PASA_asmbl_41107: 51050-51542
cDNA
(Sanger)
(ID:Location)		 016_A05.ab1: 54935-55067

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004156_040 0.0 - - PREDICTED: uncharacterized protein LOC105110611 [Populus euphratica]
2 Hb_148200_010 0.0645636672 - - hypothetical protein 33 [Hevea brasiliensis]
3 Hb_000193_120 0.0654638763 - - PREDICTED: protein preY, mitochondrial [Jatropha curcas]
4 Hb_003053_030 0.0665597337 - - PREDICTED: transport and Golgi organization 2 homolog [Jatropha curcas]
5 Hb_000012_100 0.0736307712 - - UPF0587 protein C1orf123 homolog [Jatropha curcas]
6 Hb_001191_090 0.0752182871 - - PREDICTED: uncharacterized protein LOC105643880 [Jatropha curcas]
7 Hb_000181_300 0.0759233493 - - PREDICTED: uncharacterized protein LOC105650445 isoform X2 [Jatropha curcas]
8 Hb_003376_130 0.0831987707 transcription factor TF Family: S1Fa-like DNA-binding protein S1FA, putative [Ricinus communis]
9 Hb_002107_120 0.0860129452 - - PREDICTED: transcription elongation factor 1 homolog [Jatropha curcas]
10 Hb_001016_090 0.0865111735 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 1 [Populus euphratica]
11 Hb_002374_390 0.08799959 - - vacuolar ATP synthase proteolipid subunit 1, 2, 3, putative [Ricinus communis]
12 Hb_001279_360 0.088614454 - - protein with unknown function [Ricinus communis]
13 Hb_000364_030 0.0890277768 - - RNA binding protein, putative [Ricinus communis]
14 Hb_005181_030 0.0905271157 - - PREDICTED: huntingtin-interacting protein K [Jatropha curcas]
15 Hb_026048_070 0.0917223503 - - PREDICTED: uncharacterized protein LOC105645736 [Jatropha curcas]
16 Hb_017948_010 0.0919516739 - - mitochondrial thioredoxin 2 [Hevea brasiliensis]
17 Hb_001076_020 0.0922242645 - - PREDICTED: cytochrome b-c1 complex subunit 8 [Eucalyptus grandis]
18 Hb_000329_330 0.0925539405 - - PREDICTED: vesicle-associated protein 1-2-like [Jatropha curcas]
19 Hb_000173_220 0.092614112 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein At5g19025 [Jatropha curcas]
20 Hb_002835_320 0.0928297205 - - 60S ribosomal protein L27B [Hevea brasiliensis]

Gene co-expression network

sample Hb_004156_040 Hb_004156_040 Hb_148200_010 Hb_148200_010 Hb_004156_040--Hb_148200_010 Hb_000193_120 Hb_000193_120 Hb_004156_040--Hb_000193_120 Hb_003053_030 Hb_003053_030 Hb_004156_040--Hb_003053_030 Hb_000012_100 Hb_000012_100 Hb_004156_040--Hb_000012_100 Hb_001191_090 Hb_001191_090 Hb_004156_040--Hb_001191_090 Hb_000181_300 Hb_000181_300 Hb_004156_040--Hb_000181_300 Hb_148200_010--Hb_001191_090 Hb_003376_030 Hb_003376_030 Hb_148200_010--Hb_003376_030 Hb_148200_010--Hb_003053_030 Hb_001433_050 Hb_001433_050 Hb_148200_010--Hb_001433_050 Hb_001279_360 Hb_001279_360 Hb_148200_010--Hb_001279_360 Hb_000193_120--Hb_000181_300 Hb_000103_010 Hb_000103_010 Hb_000193_120--Hb_000103_010 Hb_000193_120--Hb_000012_100 Hb_001634_040 Hb_001634_040 Hb_000193_120--Hb_001634_040 Hb_001016_090 Hb_001016_090 Hb_000193_120--Hb_001016_090 Hb_003053_030--Hb_001191_090 Hb_003053_030--Hb_000181_300 Hb_000364_030 Hb_000364_030 Hb_003053_030--Hb_000364_030 Hb_003994_040 Hb_003994_040 Hb_003053_030--Hb_003994_040 Hb_000012_100--Hb_000181_300 Hb_000012_100--Hb_001634_040 Hb_000012_100--Hb_003053_030 Hb_006573_220 Hb_006573_220 Hb_000012_100--Hb_006573_220 Hb_000173_220 Hb_000173_220 Hb_001191_090--Hb_000173_220 Hb_001191_090--Hb_006573_220 Hb_001191_090--Hb_000181_300 Hb_001191_090--Hb_003376_030 Hb_002374_390 Hb_002374_390 Hb_000181_300--Hb_002374_390 Hb_000181_300--Hb_000103_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
124.988 39.6886 91.1216 122.152 166.49 137.1
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
474.802 611.641 351.64 182.8 95.6375

CAGE analysis