Hb_004156_050

Information

Type transcription factor
Description TF Family: TCP
Location Contig4156: 57379-58641
Sequence    

Annotation

kegg
ID rcu:RCOM_0685420
description transcription factor, putative
nr
ID XP_011009347.1
description PREDICTED: transcription factor TCP23-like [Populus euphratica]
swissprot
ID Q9C7G4
description Transcription factor TCP22 OS=Arabidopsis thaliana GN=TCP22 PE=2 SV=1
trembl
ID B9SLD5
description Transcription factor, putative OS=Ricinus communis GN=RCOM_0685420 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004156_050 0.0 transcription factor TF Family: TCP PREDICTED: transcription factor TCP23-like [Populus euphratica]
2 Hb_001227_060 0.0629861827 - - PREDICTED: pentatricopeptide repeat-containing protein At4g20740 [Jatropha curcas]
3 Hb_000340_230 0.0893186265 - - synapse-associated protein, putative [Ricinus communis]
4 Hb_000665_060 0.0901076461 - - PREDICTED: trafficking protein particle complex II-specific subunit 120 homolog [Jatropha curcas]
5 Hb_172632_080 0.0921502205 - - PREDICTED: uncharacterized protein LOC105141138 isoform X1 [Populus euphratica]
6 Hb_001198_100 0.0925529543 - - PREDICTED: serine hydroxymethyltransferase 7-like [Jatropha curcas]
7 Hb_004225_050 0.0945251906 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
8 Hb_006915_030 0.096255972 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 8 [Jatropha curcas]
9 Hb_000207_330 0.0968937653 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Jatropha curcas]
10 Hb_188063_020 0.0973242049 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004143_130 0.0990619571 - - PREDICTED: BEACH domain-containing protein lvsC [Jatropha curcas]
12 Hb_002942_100 0.1004263918 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61990, mitochondrial [Jatropha curcas]
13 Hb_003376_400 0.1008102664 - - PREDICTED: pentatricopeptide repeat-containing protein At2g37230 [Jatropha curcas]
14 Hb_006711_100 0.1015230622 - - PREDICTED: uncharacterized protein LOC105637078 [Jatropha curcas]
15 Hb_009486_140 0.1030248624 - - PREDICTED: uncharacterized protein LOC105643248 [Jatropha curcas]
16 Hb_006634_070 0.1037958006 - - PREDICTED: calcium-dependent protein kinase 13 [Jatropha curcas]
17 Hb_003253_040 0.1039567387 - - PREDICTED: uncharacterized protein At5g41620 [Jatropha curcas]
18 Hb_062135_030 0.1053154858 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
19 Hb_009218_010 0.1057330378 - - PREDICTED: uncharacterized protein LOC105636602 isoform X1 [Jatropha curcas]
20 Hb_002660_010 0.1058556271 transcription factor TF Family: ARF PREDICTED: auxin response factor 18-like [Jatropha curcas]

Gene co-expression network

sample Hb_004156_050 Hb_004156_050 Hb_001227_060 Hb_001227_060 Hb_004156_050--Hb_001227_060 Hb_000340_230 Hb_000340_230 Hb_004156_050--Hb_000340_230 Hb_000665_060 Hb_000665_060 Hb_004156_050--Hb_000665_060 Hb_172632_080 Hb_172632_080 Hb_004156_050--Hb_172632_080 Hb_001198_100 Hb_001198_100 Hb_004156_050--Hb_001198_100 Hb_004225_050 Hb_004225_050 Hb_004156_050--Hb_004225_050 Hb_003168_110 Hb_003168_110 Hb_001227_060--Hb_003168_110 Hb_000050_190 Hb_000050_190 Hb_001227_060--Hb_000050_190 Hb_001329_140 Hb_001329_140 Hb_001227_060--Hb_001329_140 Hb_001213_050 Hb_001213_050 Hb_001227_060--Hb_001213_050 Hb_004672_040 Hb_004672_040 Hb_001227_060--Hb_004672_040 Hb_001163_100 Hb_001163_100 Hb_000340_230--Hb_001163_100 Hb_004052_170 Hb_004052_170 Hb_000340_230--Hb_004052_170 Hb_000913_020 Hb_000913_020 Hb_000340_230--Hb_000913_020 Hb_029510_050 Hb_029510_050 Hb_000340_230--Hb_029510_050 Hb_002495_080 Hb_002495_080 Hb_000340_230--Hb_002495_080 Hb_005686_090 Hb_005686_090 Hb_000340_230--Hb_005686_090 Hb_000174_180 Hb_000174_180 Hb_000665_060--Hb_000174_180 Hb_000156_010 Hb_000156_010 Hb_000665_060--Hb_000156_010 Hb_000254_090 Hb_000254_090 Hb_000665_060--Hb_000254_090 Hb_000192_080 Hb_000192_080 Hb_000665_060--Hb_000192_080 Hb_009218_010 Hb_009218_010 Hb_000665_060--Hb_009218_010 Hb_000009_560 Hb_000009_560 Hb_000665_060--Hb_000009_560 Hb_172632_080--Hb_009218_010 Hb_000072_220 Hb_000072_220 Hb_172632_080--Hb_000072_220 Hb_001199_100 Hb_001199_100 Hb_172632_080--Hb_001199_100 Hb_009548_020 Hb_009548_020 Hb_172632_080--Hb_009548_020 Hb_000457_260 Hb_000457_260 Hb_172632_080--Hb_000457_260 Hb_188063_020 Hb_188063_020 Hb_172632_080--Hb_188063_020 Hb_009767_110 Hb_009767_110 Hb_001198_100--Hb_009767_110 Hb_000028_480 Hb_000028_480 Hb_001198_100--Hb_000028_480 Hb_006649_050 Hb_006649_050 Hb_001198_100--Hb_006649_050 Hb_006915_030 Hb_006915_030 Hb_001198_100--Hb_006915_030 Hb_001409_020 Hb_001409_020 Hb_001198_100--Hb_001409_020 Hb_001341_170 Hb_001341_170 Hb_001198_100--Hb_001341_170 Hb_028912_050 Hb_028912_050 Hb_004225_050--Hb_028912_050 Hb_004225_050--Hb_188063_020 Hb_004225_050--Hb_006649_050 Hb_004225_050--Hb_000028_480 Hb_002849_100 Hb_002849_100 Hb_004225_050--Hb_002849_100 Hb_001004_060 Hb_001004_060 Hb_004225_050--Hb_001004_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.7002 9.7419 5.09988 10.836 10.3649 11.8785
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.2227 10.4198 18.0328 13.2678 15.3923

CAGE analysis