Hb_004156_060

Information

Type -
Description -
Location Contig4156: 70857-75425
Sequence    

Annotation

kegg
ID cit:102620339
description alkaline/neutral invertase CINV2-like
nr
ID ADC68261.1
description neutral/alkaline invertase 1 [Hevea brasiliensis]
swissprot
ID Q67XD9
description Alkaline/neutral invertase CINV2 OS=Arabidopsis thaliana GN=CINV2 PE=1 SV=1
trembl
ID E9KF96
description Neutral/alkaline invertase 1 OS=Hevea brasiliensis GN=NIN1 PE=2 SV=1
Gene Ontology
ID GO:0004575
description probable alkaline neutral invertase d

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41110: 70906-72080
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004156_060 0.0 - - neutral/alkaline invertase 1 [Hevea brasiliensis]
2 Hb_154381_050 0.0747841792 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000208_290 0.0802933053 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 2 isoform X2 [Jatropha curcas]
4 Hb_006029_010 0.0817336145 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]
5 Hb_000230_110 0.1044322667 - - PREDICTED: uncharacterized protein LOC105647634 [Jatropha curcas]
6 Hb_176022_020 0.1073928179 - - cytochrome P450, putative [Ricinus communis]
7 Hb_012055_020 0.109759671 - - PREDICTED: metal transporter Nramp3 [Jatropha curcas]
8 Hb_000161_030 0.1099518345 transcription factor TF Family: TCP PREDICTED: transcription factor TCP8 [Jatropha curcas]
9 Hb_002172_030 0.1150042242 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105639104 isoform X1 [Jatropha curcas]
10 Hb_001102_110 0.1168703291 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1-like [Jatropha curcas]
11 Hb_001115_050 0.1182905244 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
12 Hb_000300_530 0.1243289667 - - PREDICTED: uncharacterized protein DDB_G0286299-like [Gossypium raimondii]
13 Hb_003404_030 0.1245413206 - - PREDICTED: monogalactosyldiacylglycerol synthase 2, chloroplastic-like isoform X1 [Jatropha curcas]
14 Hb_127979_010 0.1246147089 - - PREDICTED: uncharacterized protein LOC105629383 [Jatropha curcas]
15 Hb_011021_030 0.126015545 - - PREDICTED: uncharacterized protein LOC105644390 [Jatropha curcas]
16 Hb_019613_020 0.1279207764 - - phospholipase C, putative [Ricinus communis]
17 Hb_002078_040 0.128874095 - - protein with unknown function [Ricinus communis]
18 Hb_000208_240 0.1290845267 - - PREDICTED: uncharacterized protein LOC105631307 [Jatropha curcas]
19 Hb_007786_010 0.1293852914 - - PREDICTED: uncharacterized protein LOC100801920 [Glycine max]
20 Hb_012654_020 0.1300041142 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004156_060 Hb_004156_060 Hb_154381_050 Hb_154381_050 Hb_004156_060--Hb_154381_050 Hb_000208_290 Hb_000208_290 Hb_004156_060--Hb_000208_290 Hb_006029_010 Hb_006029_010 Hb_004156_060--Hb_006029_010 Hb_000230_110 Hb_000230_110 Hb_004156_060--Hb_000230_110 Hb_176022_020 Hb_176022_020 Hb_004156_060--Hb_176022_020 Hb_012055_020 Hb_012055_020 Hb_004156_060--Hb_012055_020 Hb_001115_050 Hb_001115_050 Hb_154381_050--Hb_001115_050 Hb_005410_010 Hb_005410_010 Hb_154381_050--Hb_005410_010 Hb_002172_030 Hb_002172_030 Hb_154381_050--Hb_002172_030 Hb_154381_050--Hb_006029_010 Hb_012654_020 Hb_012654_020 Hb_154381_050--Hb_012654_020 Hb_000161_030 Hb_000161_030 Hb_000208_290--Hb_000161_030 Hb_000208_290--Hb_006029_010 Hb_022288_010 Hb_022288_010 Hb_000208_290--Hb_022288_010 Hb_000208_290--Hb_154381_050 Hb_006091_030 Hb_006091_030 Hb_000208_290--Hb_006091_030 Hb_006029_010--Hb_000161_030 Hb_000491_080 Hb_000491_080 Hb_006029_010--Hb_000491_080 Hb_007786_010 Hb_007786_010 Hb_006029_010--Hb_007786_010 Hb_182026_010 Hb_182026_010 Hb_006029_010--Hb_182026_010 Hb_000733_060 Hb_000733_060 Hb_006029_010--Hb_000733_060 Hb_003404_030 Hb_003404_030 Hb_000230_110--Hb_003404_030 Hb_000230_110--Hb_012055_020 Hb_000230_110--Hb_176022_020 Hb_000230_110--Hb_006029_010 Hb_000088_040 Hb_000088_040 Hb_000230_110--Hb_000088_040 Hb_176022_020--Hb_003404_030 Hb_019613_020 Hb_019613_020 Hb_176022_020--Hb_019613_020 Hb_176022_020--Hb_012055_020 Hb_176022_020--Hb_000088_040 Hb_040996_010 Hb_040996_010 Hb_176022_020--Hb_040996_010 Hb_000005_050 Hb_000005_050 Hb_176022_020--Hb_000005_050 Hb_005227_070 Hb_005227_070 Hb_012055_020--Hb_005227_070 Hb_000984_180 Hb_000984_180 Hb_012055_020--Hb_000984_180 Hb_034083_010 Hb_034083_010 Hb_012055_020--Hb_034083_010 Hb_073171_110 Hb_073171_110 Hb_012055_020--Hb_073171_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
55.0456 4.41696 3.37275 7.12615 73.0597 67.3392
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.2328 19.7664 42.2279 12.2866 2.32816

CAGE analysis