Hb_004157_030

Information

Type -
Description -
Location Contig4157: 14803-17026
Sequence    

Annotation

kegg
ID pxb:103930713
description 40S ribosomal protein S15a-1
nr
ID XP_012081549.1
description PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
swissprot
ID P42798
description 40S ribosomal protein S15a-1 OS=Arabidopsis thaliana GN=RPS15AA PE=2 SV=2
trembl
ID A0A0D2N820
description Gossypium raimondii chromosome 1, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_001G108200 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s15a-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41113: 14914-16977
cDNA
(Sanger)
(ID:Location)		 006_C07.ab1: 15657-16654 , 006_K03.ab1: 15657-16636 , 034_L01.ab1: 15657-16654 , 039_H11.ab1: 15657-16654

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004157_030 0.0 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
2 Hb_003226_100 0.0569204035 - - PREDICTED: 60S ribosomal protein L18-2 [Jatropha curcas]
3 Hb_003018_020 0.0617397527 - - PREDICTED: uncharacterized protein LOC105628697 [Jatropha curcas]
4 Hb_001814_050 0.06708033 - - PREDICTED: single-stranded DNA-binding protein, mitochondrial isoform X1 [Jatropha curcas]
5 Hb_000134_070 0.0715484963 - - 60S ribosomal protein L6, putative [Ricinus communis]
6 Hb_000506_070 0.0720248818 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
7 Hb_174865_010 0.0727753393 - - transcription initiation factor iia (tfiia), gamma chain, putative [Ricinus communis]
8 Hb_010068_020 0.0744637779 - - PREDICTED: uncharacterized protein LOC105632966 [Jatropha curcas]
9 Hb_002798_020 0.0748313893 - - PREDICTED: uncharacterized protein LOC105647735 [Jatropha curcas]
10 Hb_005181_030 0.0779712389 - - PREDICTED: huntingtin-interacting protein K [Jatropha curcas]
11 Hb_000172_320 0.0785036138 - - PREDICTED: ribosome biogenesis protein TSR3 homolog [Jatropha curcas]
12 Hb_006541_010 0.0789120947 - - PREDICTED: uncharacterized protein LOC105637261 isoform X1 [Jatropha curcas]
13 Hb_000152_420 0.0799237267 - - hypothetical protein B456_001G174200, partial [Gossypium raimondii]
14 Hb_000836_470 0.0811094692 - - -
15 Hb_000920_110 0.0812836334 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Jatropha curcas]
16 Hb_007441_040 0.0815768869 - - PREDICTED: protein mago nashi homolog [Jatropha curcas]
17 Hb_002660_030 0.0820475565 - - conserved hypothetical protein [Ricinus communis]
18 Hb_009182_010 0.0827251969 - - PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2-like [Jatropha curcas]
19 Hb_001616_040 0.0834337274 - - PREDICTED: uncharacterized protein LOC105644362 [Jatropha curcas]
20 Hb_007065_010 0.0837368392 - - hypothetical protein Csa_3G379730 [Cucumis sativus]

Gene co-expression network

sample Hb_004157_030 Hb_004157_030 Hb_003226_100 Hb_003226_100 Hb_004157_030--Hb_003226_100 Hb_003018_020 Hb_003018_020 Hb_004157_030--Hb_003018_020 Hb_001814_050 Hb_001814_050 Hb_004157_030--Hb_001814_050 Hb_000134_070 Hb_000134_070 Hb_004157_030--Hb_000134_070 Hb_000506_070 Hb_000506_070 Hb_004157_030--Hb_000506_070 Hb_174865_010 Hb_174865_010 Hb_004157_030--Hb_174865_010 Hb_000920_110 Hb_000920_110 Hb_003226_100--Hb_000920_110 Hb_003226_100--Hb_003018_020 Hb_002056_050 Hb_002056_050 Hb_003226_100--Hb_002056_050 Hb_001616_040 Hb_001616_040 Hb_003226_100--Hb_001616_040 Hb_143496_010 Hb_143496_010 Hb_003226_100--Hb_143496_010 Hb_003018_020--Hb_174865_010 Hb_003018_020--Hb_000506_070 Hb_001141_140 Hb_001141_140 Hb_003018_020--Hb_001141_140 Hb_000836_470 Hb_000836_470 Hb_003018_020--Hb_000836_470 Hb_006816_530 Hb_006816_530 Hb_001814_050--Hb_006816_530 Hb_004375_100 Hb_004375_100 Hb_001814_050--Hb_004375_100 Hb_009793_010 Hb_009793_010 Hb_001814_050--Hb_009793_010 Hb_002043_130 Hb_002043_130 Hb_001814_050--Hb_002043_130 Hb_001505_020 Hb_001505_020 Hb_001814_050--Hb_001505_020 Hb_000136_170 Hb_000136_170 Hb_000134_070--Hb_000136_170 Hb_002660_030 Hb_002660_030 Hb_000134_070--Hb_002660_030 Hb_003226_210 Hb_003226_210 Hb_000134_070--Hb_003226_210 Hb_086639_090 Hb_086639_090 Hb_000134_070--Hb_086639_090 Hb_000134_070--Hb_001505_020 Hb_000735_040 Hb_000735_040 Hb_000506_070--Hb_000735_040 Hb_000062_650 Hb_000062_650 Hb_000506_070--Hb_000062_650 Hb_000506_070--Hb_003226_100 Hb_000506_070--Hb_001141_140 Hb_001863_430 Hb_001863_430 Hb_000506_070--Hb_001863_430 Hb_174865_010--Hb_000735_040 Hb_000676_160 Hb_000676_160 Hb_174865_010--Hb_000676_160 Hb_179296_010 Hb_179296_010 Hb_174865_010--Hb_179296_010 Hb_000317_070 Hb_000317_070 Hb_174865_010--Hb_000317_070 Hb_007441_300 Hb_007441_300 Hb_174865_010--Hb_007441_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
144.773 51.2888 133.083 162.327 121.852 191.41
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
273.062 521.23 166.766 161.119 90.7098

CAGE analysis