Hb_004157_040

Information

Type -
Description -
Location Contig4157: 30249-35915
Sequence    

Annotation

kegg
ID cic:CICLE_v10012725mg
description hypothetical protein
nr
ID AEA92304.1
description Rab2 [Hevea brasiliensis]
swissprot
ID P28186
description Ras-related protein RABE1c OS=Arabidopsis thaliana GN=RABE1C PE=1 SV=1
trembl
ID F2VXU2
description Rab2 OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0005829
description ras-related protein rabe1c-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41114: 30138-35898 , PASA_asmbl_41115: 31020-31625
cDNA
(Sanger)
(ID:Location)		 002_I08.ab1: 30277-35145

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004157_040 0.0 - - Rab2 [Hevea brasiliensis]
2 Hb_000527_060 0.0795383448 - - Protein C20orf11, putative [Ricinus communis]
3 Hb_024439_010 0.0807503529 - - PREDICTED: LAG1 longevity assurance homolog 2 [Jatropha curcas]
4 Hb_000805_240 0.0808453649 - - PREDICTED: uncharacterized protein C20orf24 homolog [Jatropha curcas]
5 Hb_006615_240 0.0849847287 - - PREDICTED: uncharacterized protein LOC105640673 [Jatropha curcas]
6 Hb_004696_080 0.0851438689 - - PREDICTED: uncharacterized protein At1g01500-like [Populus euphratica]
7 Hb_000115_220 0.0885986034 - - hypothetical protein CISIN_1g0379742mg, partial [Citrus sinensis]
8 Hb_012286_030 0.0892673743 transcription factor TF Family: MED7 PREDICTED: mediator of RNA polymerase II transcription subunit 7a [Solanum lycopersicum]
9 Hb_000390_300 0.0892969822 transcription factor TF Family: GNAT PREDICTED: histone acetyltransferase MCC1 [Jatropha curcas]
10 Hb_000696_290 0.089585294 - - PREDICTED: UPF0664 stress-induced protein C29B12.11c [Jatropha curcas]
11 Hb_003992_270 0.0934594978 - - PREDICTED: uncharacterized protein LOC105634861 isoform X3 [Jatropha curcas]
12 Hb_000175_340 0.0937566508 - - PREDICTED: uncharacterized protein LOC105634861 isoform X3 [Jatropha curcas]
13 Hb_004058_030 0.0967933618 - - PREDICTED: stomatin-like protein 2, mitochondrial [Jatropha curcas]
14 Hb_000261_140 0.1007293952 - - -
15 Hb_000329_110 0.1036586775 - - PREDICTED: uncharacterized protein LOC105643142 [Jatropha curcas]
16 Hb_000086_280 0.1036867749 - - PREDICTED: vacuolar protein sorting-associated protein 2 homolog 3-like [Gossypium raimondii]
17 Hb_004109_170 0.1039046927 - - PREDICTED: probable ribokinase [Jatropha curcas]
18 Hb_021068_040 0.1041400385 - - PREDICTED: XIAP-associated factor 1 [Jatropha curcas]
19 Hb_004102_110 0.104493907 - - Monothiol glutaredoxin-4, putative [Ricinus communis]
20 Hb_006693_020 0.1049656796 - - PREDICTED: frataxin, mitochondrial [Gossypium raimondii]

Gene co-expression network

sample Hb_004157_040 Hb_004157_040 Hb_000527_060 Hb_000527_060 Hb_004157_040--Hb_000527_060 Hb_024439_010 Hb_024439_010 Hb_004157_040--Hb_024439_010 Hb_000805_240 Hb_000805_240 Hb_004157_040--Hb_000805_240 Hb_006615_240 Hb_006615_240 Hb_004157_040--Hb_006615_240 Hb_004696_080 Hb_004696_080 Hb_004157_040--Hb_004696_080 Hb_000115_220 Hb_000115_220 Hb_004157_040--Hb_000115_220 Hb_012286_030 Hb_012286_030 Hb_000527_060--Hb_012286_030 Hb_001123_130 Hb_001123_130 Hb_000527_060--Hb_001123_130 Hb_000261_140 Hb_000261_140 Hb_000527_060--Hb_000261_140 Hb_000527_060--Hb_000115_220 Hb_004143_150 Hb_004143_150 Hb_000527_060--Hb_004143_150 Hb_000920_110 Hb_000920_110 Hb_000527_060--Hb_000920_110 Hb_000390_300 Hb_000390_300 Hb_024439_010--Hb_000390_300 Hb_017895_040 Hb_017895_040 Hb_024439_010--Hb_017895_040 Hb_004058_030 Hb_004058_030 Hb_024439_010--Hb_004058_030 Hb_004102_110 Hb_004102_110 Hb_024439_010--Hb_004102_110 Hb_005496_140 Hb_005496_140 Hb_024439_010--Hb_005496_140 Hb_024439_010--Hb_004696_080 Hb_021068_040 Hb_021068_040 Hb_000805_240--Hb_021068_040 Hb_000805_240--Hb_006615_240 Hb_009615_070 Hb_009615_070 Hb_000805_240--Hb_009615_070 Hb_008071_020 Hb_008071_020 Hb_000805_240--Hb_008071_020 Hb_000805_240--Hb_004696_080 Hb_152784_010 Hb_152784_010 Hb_000805_240--Hb_152784_010 Hb_003582_060 Hb_003582_060 Hb_006615_240--Hb_003582_060 Hb_010098_050 Hb_010098_050 Hb_006615_240--Hb_010098_050 Hb_006615_240--Hb_000390_300 Hb_004109_170 Hb_004109_170 Hb_006615_240--Hb_004109_170 Hb_000003_230 Hb_000003_230 Hb_006615_240--Hb_000003_230 Hb_001341_150 Hb_001341_150 Hb_006615_240--Hb_001341_150 Hb_000638_250 Hb_000638_250 Hb_004696_080--Hb_000638_250 Hb_004696_080--Hb_152784_010 Hb_148121_040 Hb_148121_040 Hb_004696_080--Hb_148121_040 Hb_000291_080 Hb_000291_080 Hb_004696_080--Hb_000291_080 Hb_000193_110 Hb_000193_110 Hb_000115_220--Hb_000193_110 Hb_010175_040 Hb_010175_040 Hb_000115_220--Hb_010175_040 Hb_000115_220--Hb_000261_140 Hb_000035_370 Hb_000035_370 Hb_000115_220--Hb_000035_370 Hb_003992_270 Hb_003992_270 Hb_000115_220--Hb_003992_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.943 15.6304 19.7193 26.9525 22.6556 10.7028
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.0349 42.8099 31.6953 13.9478 11.3633

CAGE analysis