Hb_004157_050

Information

Type -
Description -
Location Contig4157: 36469-39933
Sequence    

Annotation

kegg
ID rcu:RCOM_0390850
description DNA binding protein, putative
nr
ID XP_012064983.1
description PREDICTED: uncharacterized protein LOC105628218 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L703
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05664 PE=4 SV=1
Gene Ontology
ID GO:0044699
description dna binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41116: 37633-39852
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004157_050 0.0 - - PREDICTED: uncharacterized protein LOC105628218 isoform X1 [Jatropha curcas]
2 Hb_001301_110 0.0513233925 - - PREDICTED: vacuolar protein sorting-associated protein 22 homolog 1 [Jatropha curcas]
3 Hb_000069_720 0.0539778799 - - PREDICTED: exosome complex component RRP41-like [Jatropha curcas]
4 Hb_000665_140 0.0621669459 - - PREDICTED: protein MEMO1 [Jatropha curcas]
5 Hb_001123_040 0.0641278069 - - PREDICTED: R3H domain-containing protein 1-like [Jatropha curcas]
6 Hb_003058_120 0.0666216938 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 4 homolog [Jatropha curcas]
7 Hb_011218_090 0.0695743644 - - PREDICTED: autophagy-related protein 18a [Jatropha curcas]
8 Hb_001218_030 0.0710596498 - - PREDICTED: uncharacterized protein LOC105630612 [Jatropha curcas]
9 Hb_000483_300 0.0714107009 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Populus euphratica]
10 Hb_023371_020 0.0735647337 - - PREDICTED: uncharacterized protein LOC105633512 [Jatropha curcas]
11 Hb_002301_150 0.0764630685 - - Drought-responsive family protein [Theobroma cacao]
12 Hb_000167_010 0.0770699726 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003878_090 0.077216852 - - PREDICTED: polynucleotide 3'-phosphatase ZDP [Jatropha curcas]
14 Hb_000347_240 0.0785150651 - - PREDICTED: proteasome subunit alpha type-6 [Pyrus x bretschneideri]
15 Hb_005588_060 0.0785210309 - - PREDICTED: succinate dehydrogenase subunit 5, mitochondrial [Jatropha curcas]
16 Hb_000460_030 0.0797208856 - - 4-hydroxybenzoate octaprenyltransferase, putative [Ricinus communis]
17 Hb_000029_140 0.0809933979 - - PREDICTED: putative GDP-L-fucose synthase 2 [Populus euphratica]
18 Hb_004108_220 0.0812122455 - - PREDICTED: mRNA-capping enzyme-like isoform X1 [Jatropha curcas]
19 Hb_000917_230 0.0814726213 - - PREDICTED: coiled-coil domain-containing protein 130-like [Jatropha curcas]
20 Hb_003465_030 0.0817344249 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004157_050 Hb_004157_050 Hb_001301_110 Hb_001301_110 Hb_004157_050--Hb_001301_110 Hb_000069_720 Hb_000069_720 Hb_004157_050--Hb_000069_720 Hb_000665_140 Hb_000665_140 Hb_004157_050--Hb_000665_140 Hb_001123_040 Hb_001123_040 Hb_004157_050--Hb_001123_040 Hb_003058_120 Hb_003058_120 Hb_004157_050--Hb_003058_120 Hb_011218_090 Hb_011218_090 Hb_004157_050--Hb_011218_090 Hb_001301_110--Hb_000069_720 Hb_005588_060 Hb_005588_060 Hb_001301_110--Hb_005588_060 Hb_001301_110--Hb_000665_140 Hb_000167_010 Hb_000167_010 Hb_001301_110--Hb_000167_010 Hb_007894_060 Hb_007894_060 Hb_001301_110--Hb_007894_060 Hb_003878_090 Hb_003878_090 Hb_000069_720--Hb_003878_090 Hb_003678_020 Hb_003678_020 Hb_000069_720--Hb_003678_020 Hb_000069_720--Hb_000167_010 Hb_000840_200 Hb_000840_200 Hb_000069_720--Hb_000840_200 Hb_000665_140--Hb_003058_120 Hb_001218_030 Hb_001218_030 Hb_000665_140--Hb_001218_030 Hb_000853_150 Hb_000853_150 Hb_000665_140--Hb_000853_150 Hb_000665_140--Hb_000167_010 Hb_001123_040--Hb_001218_030 Hb_001123_040--Hb_000069_720 Hb_004934_100 Hb_004934_100 Hb_001123_040--Hb_004934_100 Hb_000035_180 Hb_000035_180 Hb_001123_040--Hb_000035_180 Hb_001828_150 Hb_001828_150 Hb_001123_040--Hb_001828_150 Hb_003058_120--Hb_000853_150 Hb_003058_120--Hb_005588_060 Hb_023001_040 Hb_023001_040 Hb_003058_120--Hb_023001_040 Hb_000392_420 Hb_000392_420 Hb_003058_120--Hb_000392_420 Hb_003058_120--Hb_000167_010 Hb_000359_060 Hb_000359_060 Hb_011218_090--Hb_000359_060 Hb_000890_150 Hb_000890_150 Hb_011218_090--Hb_000890_150 Hb_000049_210 Hb_000049_210 Hb_011218_090--Hb_000049_210 Hb_149985_010 Hb_149985_010 Hb_011218_090--Hb_149985_010 Hb_000029_140 Hb_000029_140 Hb_011218_090--Hb_000029_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.01853 5.77992 7.67132 9.14618 3.91433 4.82799
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.8492 9.06323 7.4335 8.54484 7.64136

CAGE analysis