Hb_004157_110

Information

Type -
Description -
Location Contig4157: 83740-84250
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004157_110 0.0 - - -
2 Hb_020580_010 0.2247421192 - - -
3 Hb_013429_020 0.2306412448 - - prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis]
4 Hb_174876_010 0.242998936 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
5 Hb_028486_070 0.2475779903 - - hypothetical protein CISIN_1g028119mg [Citrus sinensis]
6 Hb_000084_040 0.2481642556 - - hypothetical protein RCOM_1007940 [Ricinus communis]
7 Hb_011316_120 0.2489761786 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH118-like [Jatropha curcas]
8 Hb_009421_010 0.2508878621 - - -
9 Hb_010142_080 0.2588296715 - - PREDICTED: uncharacterized protein LOC105630660 [Jatropha curcas]
10 Hb_008370_010 0.2653430759 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_005285_010 0.2663490077 - - PREDICTED: ent-kaurenoic acid oxidase 1-like isoform X1 [Jatropha curcas]
12 Hb_001638_220 0.2939252533 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004208_100 0.2952671916 - - Ribosomal protein L3 plastid isoform 1 [Theobroma cacao]
14 Hb_149539_010 0.2953269223 - - -
15 Hb_054362_010 0.2983630303 - - PREDICTED: uncharacterized protein LOC105650428 [Jatropha curcas]
16 Hb_021616_010 0.2984118824 - - -
17 Hb_127993_010 0.2986162715 - - PREDICTED: choline monooxygenase, chloroplastic isoform X4 [Jatropha curcas]
18 Hb_169574_010 0.304104348 - - PREDICTED: uncharacterized protein LOC104120373 [Nicotiana tomentosiformis]
19 Hb_048874_010 0.3045863699 - - hypothetical protein POPTR_0016s10870g [Populus trichocarpa]
20 Hb_005799_040 0.3058538575 - - PREDICTED: bidirectional sugar transporter SWEET4-like isoform X1 [Gossypium raimondii]

Gene co-expression network

sample Hb_004157_110 Hb_004157_110 Hb_020580_010 Hb_020580_010 Hb_004157_110--Hb_020580_010 Hb_013429_020 Hb_013429_020 Hb_004157_110--Hb_013429_020 Hb_174876_010 Hb_174876_010 Hb_004157_110--Hb_174876_010 Hb_028486_070 Hb_028486_070 Hb_004157_110--Hb_028486_070 Hb_000084_040 Hb_000084_040 Hb_004157_110--Hb_000084_040 Hb_011316_120 Hb_011316_120 Hb_004157_110--Hb_011316_120 Hb_020580_010--Hb_013429_020 Hb_001638_220 Hb_001638_220 Hb_020580_010--Hb_001638_220 Hb_003321_020 Hb_003321_020 Hb_020580_010--Hb_003321_020 Hb_003117_040 Hb_003117_040 Hb_020580_010--Hb_003117_040 Hb_009421_010 Hb_009421_010 Hb_020580_010--Hb_009421_010 Hb_013429_020--Hb_003321_020 Hb_013429_020--Hb_003117_040 Hb_010142_080 Hb_010142_080 Hb_013429_020--Hb_010142_080 Hb_013429_020--Hb_009421_010 Hb_021616_010 Hb_021616_010 Hb_013429_020--Hb_021616_010 Hb_174876_010--Hb_021616_010 Hb_001534_170 Hb_001534_170 Hb_174876_010--Hb_001534_170 Hb_010417_010 Hb_010417_010 Hb_174876_010--Hb_010417_010 Hb_004208_100 Hb_004208_100 Hb_174876_010--Hb_004208_100 Hb_000009_070 Hb_000009_070 Hb_174876_010--Hb_000009_070 Hb_000948_100 Hb_000948_100 Hb_028486_070--Hb_000948_100 Hb_028486_070--Hb_020580_010 Hb_131060_010 Hb_131060_010 Hb_028486_070--Hb_131060_010 Hb_028486_070--Hb_013429_020 Hb_007101_230 Hb_007101_230 Hb_028486_070--Hb_007101_230 Hb_000084_040--Hb_011316_120 Hb_080653_010 Hb_080653_010 Hb_000084_040--Hb_080653_010 Hb_005285_010 Hb_005285_010 Hb_000084_040--Hb_005285_010 Hb_008516_040 Hb_008516_040 Hb_000084_040--Hb_008516_040 Hb_155384_010 Hb_155384_010 Hb_000084_040--Hb_155384_010 Hb_000912_020 Hb_000912_020 Hb_011316_120--Hb_000912_020 Hb_011316_120--Hb_004208_100 Hb_011316_120--Hb_008516_040 Hb_011316_120--Hb_155384_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.285783 2.14141
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.65946 1.04752 10.5419 10.0867 0

CAGE analysis