Hb_004157_120

Information

Type -
Description -
Location Contig4157: 84252-85531
Sequence    

Annotation

kegg
ID rcu:RCOM_0300970
description hypothetical protein
nr
ID XP_012064976.1
description PREDICTED: protein UPSTREAM OF FLC [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L6Z8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05659 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004157_120 0.0 - - PREDICTED: protein UPSTREAM OF FLC [Jatropha curcas]
2 Hb_081504_010 0.1564717335 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
3 Hb_000997_330 0.1792689821 - - hypothetical protein POPTR_0010s08940g [Populus trichocarpa]
4 Hb_161072_020 0.2179844507 - - -
5 Hb_000340_340 0.2316062971 - - hypothetical protein POPTR_0014s13260g [Populus trichocarpa]
6 Hb_001364_040 0.2500067992 - - -
7 Hb_000186_340 0.2530136761 - - hypothetical protein POPTR_0011s01440g [Populus trichocarpa]
8 Hb_003878_030 0.2563090331 - - hypothetical protein POPTR_0011s11120g [Populus trichocarpa]
9 Hb_000988_040 0.2572384079 - - -
10 Hb_000363_010 0.2578053607 - - -
11 Hb_012660_020 0.2597850338 - - -
12 Hb_001150_030 0.2598251851 - - NADP-dependent oxidoreductase P1 isoform 3 [Theobroma cacao]
13 Hb_001538_140 0.2682362595 - - PREDICTED: PXMP2/4 family protein 4-like [Jatropha curcas]
14 Hb_000316_020 0.2692225517 - - protein binding protein, putative [Ricinus communis]
15 Hb_007409_020 0.2716706955 - - -
16 Hb_014549_020 0.2731351293 - - hypothetical protein POPTR_0013s12350g [Populus trichocarpa]
17 Hb_003647_030 0.2772663112 - - PREDICTED: probable glutathione S-transferase [Populus euphratica]
18 Hb_001100_010 0.2790002317 - - F-box/FBD/LRR-repeat protein [Medicago truncatula]
19 Hb_143766_100 0.2800140277 - - PREDICTED: uncharacterized protein LOC105637800 [Jatropha curcas]
20 Hb_001143_090 0.286130643 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 6 [Jatropha curcas]

Gene co-expression network

sample Hb_004157_120 Hb_004157_120 Hb_081504_010 Hb_081504_010 Hb_004157_120--Hb_081504_010 Hb_000997_330 Hb_000997_330 Hb_004157_120--Hb_000997_330 Hb_161072_020 Hb_161072_020 Hb_004157_120--Hb_161072_020 Hb_000340_340 Hb_000340_340 Hb_004157_120--Hb_000340_340 Hb_001364_040 Hb_001364_040 Hb_004157_120--Hb_001364_040 Hb_000186_340 Hb_000186_340 Hb_004157_120--Hb_000186_340 Hb_081504_010--Hb_000997_330 Hb_081504_010--Hb_161072_020 Hb_143766_100 Hb_143766_100 Hb_081504_010--Hb_143766_100 Hb_000098_220 Hb_000098_220 Hb_081504_010--Hb_000098_220 Hb_000115_050 Hb_000115_050 Hb_081504_010--Hb_000115_050 Hb_000997_330--Hb_161072_020 Hb_000997_330--Hb_001364_040 Hb_000997_330--Hb_143766_100 Hb_002400_090 Hb_002400_090 Hb_000997_330--Hb_002400_090 Hb_161072_020--Hb_002400_090 Hb_161072_020--Hb_001364_040 Hb_021888_130 Hb_021888_130 Hb_161072_020--Hb_021888_130 Hb_000567_160 Hb_000567_160 Hb_000340_340--Hb_000567_160 Hb_123051_020 Hb_123051_020 Hb_000340_340--Hb_123051_020 Hb_001252_150 Hb_001252_150 Hb_000340_340--Hb_001252_150 Hb_002890_250 Hb_002890_250 Hb_000340_340--Hb_002890_250 Hb_019153_040 Hb_019153_040 Hb_000340_340--Hb_019153_040 Hb_000988_040 Hb_000988_040 Hb_001364_040--Hb_000988_040 Hb_000193_240 Hb_000193_240 Hb_001364_040--Hb_000193_240 Hb_000638_020 Hb_000638_020 Hb_001364_040--Hb_000638_020 Hb_000832_230 Hb_000832_230 Hb_001364_040--Hb_000832_230 Hb_001143_090 Hb_001143_090 Hb_001364_040--Hb_001143_090 Hb_001837_020 Hb_001837_020 Hb_000186_340--Hb_001837_020 Hb_000186_340--Hb_081504_010 Hb_000186_340--Hb_000997_330 Hb_008643_110 Hb_008643_110 Hb_000186_340--Hb_008643_110 Hb_007218_070 Hb_007218_070 Hb_000186_340--Hb_007218_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.208282 0 0.062476 0 9.89425 6.03633
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.9183 8.91379 19.3665 11.9227 0.145845

CAGE analysis