Hb_004158_040

Information

Type -
Description -
Location Contig4158: 82138-84633
Sequence    

Annotation

kegg
ID pop:POPTR_0006s08270g
description POPTRDRAFT_866964; hypothetical protein
nr
ID XP_012074877.1
description PREDICTED: WAT1-related protein At2g37460-like [Jatropha curcas]
swissprot
ID Q9ZUS1
description WAT1-related protein At2g37460 OS=Arabidopsis thaliana GN=At2g37460 PE=2 SV=1
trembl
ID A0A067KUR7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09027 PE=4 SV=1
Gene Ontology
ID GO:0016021
description wat1-related protein at2g37460-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41125: 82152-84386 , PASA_asmbl_41126: 82886-84371
cDNA
(Sanger)
(ID:Location)		 022_L14.ab1: 82161-83082 , 033_F09.ab1: 82159-83171

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004158_040 0.0 - - PREDICTED: WAT1-related protein At2g37460-like [Jatropha curcas]
2 Hb_001579_160 0.05641512 - - PREDICTED: kininogen-1-like [Jatropha curcas]
3 Hb_001722_110 0.060574548 - - DUF26 domain-containing protein 1 precursor, putative [Ricinus communis]
4 Hb_005588_050 0.0659135796 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001454_350 0.0696333338 - - PREDICTED: uncharacterized protein LOC105643449 [Jatropha curcas]
6 Hb_010217_020 0.0774428517 - - cinnamate 4-hydroxylase [Leucaena leucocephala]
7 Hb_006618_100 0.0818233308 transcription factor TF Family: MYB MYB transcriptional factor [Populus tremula x Populus tremuloides]
8 Hb_001541_170 0.0827529345 - - hypothetical protein JCGZ_17850 [Jatropha curcas]
9 Hb_001712_010 0.0872458126 - - PREDICTED: phosphate transporter PHO1 homolog 1 [Jatropha curcas]
10 Hb_009421_060 0.0934357264 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
11 Hb_000853_140 0.0936269362 - - hypothetical protein POPTR_0014s12080g [Populus trichocarpa]
12 Hb_000953_110 0.0943427955 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105629453 [Jatropha curcas]
13 Hb_007545_220 0.0955288231 - - PREDICTED: uncharacterized protein LOC105632565 [Jatropha curcas]
14 Hb_004757_010 0.0983809976 - - PREDICTED: uncharacterized protein LOC105121200 [Populus euphratica]
15 Hb_092272_010 0.1013047794 - - -
16 Hb_145975_010 0.1014164367 - - cytochrome P450, putative [Ricinus communis]
17 Hb_005183_070 0.1053029044 - - PREDICTED: calmodulin-like protein 5 [Solanum lycopersicum]
18 Hb_027411_030 0.1093612928 - - metal ion binding protein, putative [Ricinus communis]
19 Hb_001401_110 0.1139514987 - - hypothetical protein JCGZ_04272 [Jatropha curcas]
20 Hb_001343_060 0.1142370364 - - Cytochrome P450 [Theobroma cacao]

Gene co-expression network

sample Hb_004158_040 Hb_004158_040 Hb_001579_160 Hb_001579_160 Hb_004158_040--Hb_001579_160 Hb_001722_110 Hb_001722_110 Hb_004158_040--Hb_001722_110 Hb_005588_050 Hb_005588_050 Hb_004158_040--Hb_005588_050 Hb_001454_350 Hb_001454_350 Hb_004158_040--Hb_001454_350 Hb_010217_020 Hb_010217_020 Hb_004158_040--Hb_010217_020 Hb_006618_100 Hb_006618_100 Hb_004158_040--Hb_006618_100 Hb_009421_060 Hb_009421_060 Hb_001579_160--Hb_009421_060 Hb_001541_170 Hb_001541_170 Hb_001579_160--Hb_001541_170 Hb_001579_160--Hb_001454_350 Hb_001579_160--Hb_001722_110 Hb_180088_010 Hb_180088_010 Hb_001579_160--Hb_180088_010 Hb_003638_020 Hb_003638_020 Hb_001722_110--Hb_003638_020 Hb_001722_110--Hb_001454_350 Hb_001722_110--Hb_005588_050 Hb_000339_060 Hb_000339_060 Hb_001722_110--Hb_000339_060 Hb_005588_050--Hb_001541_170 Hb_005588_050--Hb_001579_160 Hb_012787_020 Hb_012787_020 Hb_005588_050--Hb_012787_020 Hb_000580_210 Hb_000580_210 Hb_005588_050--Hb_000580_210 Hb_000188_040 Hb_000188_040 Hb_001454_350--Hb_000188_040 Hb_001454_350--Hb_010217_020 Hb_001454_350--Hb_009421_060 Hb_010217_020--Hb_006618_100 Hb_000953_110 Hb_000953_110 Hb_010217_020--Hb_000953_110 Hb_000349_280 Hb_000349_280 Hb_010217_020--Hb_000349_280 Hb_007545_220 Hb_007545_220 Hb_010217_020--Hb_007545_220 Hb_145975_010 Hb_145975_010 Hb_006618_100--Hb_145975_010 Hb_006618_100--Hb_000349_280 Hb_004757_010 Hb_004757_010 Hb_006618_100--Hb_004757_010 Hb_006618_100--Hb_001579_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 7.029 2.51021 57.4133 0.0150784 0.0496973
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.624035 11.5308

CAGE analysis