Hb_004162_100

Information

Type -
Description -
Location Contig4162: 90544-91924
Sequence    

Annotation

kegg
ID rcu:RCOM_1454050
description hypothetical protein
nr
ID XP_002513124.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9FTA0
description GEM-like protein 4 OS=Arabidopsis thaliana GN=At5g08350 PE=2 SV=1
trembl
ID B9RGH2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1454050 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41171: 90754-91934
cDNA
(Sanger)
(ID:Location)		 019_P13.ab1: 90754-91882

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004162_100 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005918_030 0.1660222813 - - hypothetical protein JCGZ_24769 [Jatropha curcas]
3 Hb_176681_010 0.1727450205 - - PREDICTED: probable RNA helicase SDE3 [Populus euphratica]
4 Hb_000602_010 0.1731128217 - - PREDICTED: rhomboid-like protease 2 isoform X1 [Jatropha curcas]
5 Hb_002073_140 0.1815240556 - - -
6 Hb_002681_110 0.1850757591 - - PREDICTED: uncharacterized protein LOC105633759 [Jatropha curcas]
7 Hb_157022_020 0.1878894777 - - nicotinamide mononucleotide adenylyltransferase, putative [Ricinus communis]
8 Hb_006153_120 0.1881024864 - - hypothetical protein JCGZ_20793 [Jatropha curcas]
9 Hb_010710_030 0.1945811064 transcription factor TF Family: G2-like PREDICTED: transcription factor LUX [Jatropha curcas]
10 Hb_000115_060 0.1951757091 - - PREDICTED: uncharacterized protein LOC103341483 [Prunus mume]
11 Hb_007181_070 0.1962362766 - - PREDICTED: alpha-galactosidase-like [Jatropha curcas]
12 Hb_000174_070 0.1996334563 - - PREDICTED: CMP-sialic acid transporter 2-like isoform X2 [Jatropha curcas]
13 Hb_000221_270 0.1999931276 - - hypothetical protein JCGZ_15813 [Jatropha curcas]
14 Hb_150651_050 0.2000329557 - - phosphoglycerate mutase, putative [Ricinus communis]
15 Hb_093458_050 0.2017281069 - - glutathione reductase [Hevea brasiliensis]
16 Hb_100506_010 0.2018876372 - - PREDICTED: uncharacterized protein LOC105133651 isoform X2 [Populus euphratica]
17 Hb_030565_130 0.202106149 - - hypothetical protein JCGZ_01083 [Jatropha curcas]
18 Hb_003551_050 0.2038563369 - - PREDICTED: mitochondrial fission 1 protein A [Jatropha curcas]
19 Hb_000573_020 0.2048379889 transcription factor TF Family: Orphans receptor histidine kinase, putative [Ricinus communis]
20 Hb_002842_020 0.2053482811 - - Prolactin regulatory element-binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_004162_100 Hb_004162_100 Hb_005918_030 Hb_005918_030 Hb_004162_100--Hb_005918_030 Hb_176681_010 Hb_176681_010 Hb_004162_100--Hb_176681_010 Hb_000602_010 Hb_000602_010 Hb_004162_100--Hb_000602_010 Hb_002073_140 Hb_002073_140 Hb_004162_100--Hb_002073_140 Hb_002681_110 Hb_002681_110 Hb_004162_100--Hb_002681_110 Hb_157022_020 Hb_157022_020 Hb_004162_100--Hb_157022_020 Hb_002539_080 Hb_002539_080 Hb_005918_030--Hb_002539_080 Hb_017124_010 Hb_017124_010 Hb_005918_030--Hb_017124_010 Hb_009265_060 Hb_009265_060 Hb_005918_030--Hb_009265_060 Hb_005433_040 Hb_005433_040 Hb_005918_030--Hb_005433_040 Hb_005918_030--Hb_002681_110 Hb_005463_020 Hb_005463_020 Hb_005918_030--Hb_005463_020 Hb_003976_010 Hb_003976_010 Hb_176681_010--Hb_003976_010 Hb_002449_020 Hb_002449_020 Hb_176681_010--Hb_002449_020 Hb_034299_060 Hb_034299_060 Hb_176681_010--Hb_034299_060 Hb_001277_330 Hb_001277_330 Hb_176681_010--Hb_001277_330 Hb_022216_020 Hb_022216_020 Hb_176681_010--Hb_022216_020 Hb_004108_050 Hb_004108_050 Hb_176681_010--Hb_004108_050 Hb_000029_020 Hb_000029_020 Hb_000602_010--Hb_000029_020 Hb_000602_010--Hb_002449_020 Hb_000482_090 Hb_000482_090 Hb_000602_010--Hb_000482_090 Hb_002687_110 Hb_002687_110 Hb_000602_010--Hb_002687_110 Hb_001691_210 Hb_001691_210 Hb_000602_010--Hb_001691_210 Hb_000115_060 Hb_000115_060 Hb_000602_010--Hb_000115_060 Hb_150651_050 Hb_150651_050 Hb_002073_140--Hb_150651_050 Hb_000345_040 Hb_000345_040 Hb_002073_140--Hb_000345_040 Hb_004077_030 Hb_004077_030 Hb_002073_140--Hb_004077_030 Hb_003030_080 Hb_003030_080 Hb_002073_140--Hb_003030_080 Hb_028977_020 Hb_028977_020 Hb_002073_140--Hb_028977_020 Hb_000029_030 Hb_000029_030 Hb_002681_110--Hb_000029_030 Hb_002681_110--Hb_157022_020 Hb_002681_110--Hb_000115_060 Hb_071736_020 Hb_071736_020 Hb_002681_110--Hb_071736_020 Hb_000317_030 Hb_000317_030 Hb_002681_110--Hb_000317_030 Hb_007919_050 Hb_007919_050 Hb_002681_110--Hb_007919_050 Hb_000922_270 Hb_000922_270 Hb_157022_020--Hb_000922_270 Hb_003408_020 Hb_003408_020 Hb_157022_020--Hb_003408_020 Hb_000174_070 Hb_000174_070 Hb_157022_020--Hb_000174_070 Hb_002735_060 Hb_002735_060 Hb_157022_020--Hb_002735_060 Hb_092100_020 Hb_092100_020 Hb_157022_020--Hb_092100_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.06668 0.216606 0.269096 4.40938 4.5017 2.82294
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.2517 4.11669 9.72932 6.37477 0.457062

CAGE analysis