Hb_004162_120

Information

Type -
Description -
Location Contig4162: 100084-113404
Sequence    

Annotation

kegg
ID pop:POPTR_0001s22040g
description POPTRDRAFT_181203; vacuolar assembly family protein
nr
ID XP_011005423.1
description PREDICTED: vacuolar protein sorting-associated protein 41 homolog [Populus euphratica]
swissprot
ID P93043
description Vacuolar protein sorting-associated protein 41 homolog OS=Arabidopsis thaliana GN=VPS41 PE=3 SV=3
trembl
ID B9GEU9
description Vacuolar assembly family protein OS=Populus trichocarpa GN=POPTR_0001s22040g PE=4 SV=2
Gene Ontology
ID GO:0005622
description vacuolar protein sorting-associated protein 41 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004162_120 0.0 - - PREDICTED: vacuolar protein sorting-associated protein 41 homolog [Populus euphratica]
2 Hb_065500_030 0.097653866 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI7 [Jatropha curcas]
3 Hb_000751_140 0.0983980592 - - PREDICTED: clathrin interactor EPSIN 2 [Jatropha curcas]
4 Hb_000917_100 0.1038669538 - - PREDICTED: phosphoenolpyruvate carboxylase 4 [Jatropha curcas]
5 Hb_000197_030 0.1045398462 - - hypothetical protein RCOM_1447500 [Ricinus communis]
6 Hb_080451_010 0.1051192772 - - PREDICTED: ankyrin repeat-containing protein At2g01680 [Jatropha curcas]
7 Hb_002005_120 0.1054993172 - - PREDICTED: protein MEI2-like 5 [Jatropha curcas]
8 Hb_000371_060 0.1096214802 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 1 protein, putative [Ricinus communis]
9 Hb_000270_230 0.1162406244 - - PREDICTED: probable beta-1,3-galactosyltransferase 19 [Jatropha curcas]
10 Hb_009897_010 0.1195490818 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
11 Hb_000979_240 0.120119729 transcription factor TF Family: GRAS PREDICTED: DELLA protein GAIP-B [Jatropha curcas]
12 Hb_002016_060 0.1208926915 - - PREDICTED: uncharacterized protein LOC105642502 [Jatropha curcas]
13 Hb_001259_120 0.1226234557 - - hypothetical protein EUGRSUZ_C043222, partial [Eucalyptus grandis]
14 Hb_006907_140 0.1228063178 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000362_090 0.1232553019 - - PREDICTED: uncharacterized protein LOC105635736 isoform X1 [Jatropha curcas]
16 Hb_012239_030 0.1234011122 - - ankyrin repeat-containing protein, putative [Ricinus communis]
17 Hb_011716_110 0.1246765909 - - PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]
18 Hb_000599_130 0.1253413395 - - PREDICTED: U-box domain-containing protein 3 [Jatropha curcas]
19 Hb_000856_020 0.1254906888 - - PREDICTED: probable beta-1,3-galactosyltransferase 19 [Jatropha curcas]
20 Hb_000059_020 0.1273712207 - - PREDICTED: F-box protein SKP2A [Jatropha curcas]

Gene co-expression network

sample Hb_004162_120 Hb_004162_120 Hb_065500_030 Hb_065500_030 Hb_004162_120--Hb_065500_030 Hb_000751_140 Hb_000751_140 Hb_004162_120--Hb_000751_140 Hb_000917_100 Hb_000917_100 Hb_004162_120--Hb_000917_100 Hb_000197_030 Hb_000197_030 Hb_004162_120--Hb_000197_030 Hb_080451_010 Hb_080451_010 Hb_004162_120--Hb_080451_010 Hb_002005_120 Hb_002005_120 Hb_004162_120--Hb_002005_120 Hb_065500_030--Hb_002005_120 Hb_011828_030 Hb_011828_030 Hb_065500_030--Hb_011828_030 Hb_000836_020 Hb_000836_020 Hb_065500_030--Hb_000836_020 Hb_000117_070 Hb_000117_070 Hb_065500_030--Hb_000117_070 Hb_000599_130 Hb_000599_130 Hb_065500_030--Hb_000599_130 Hb_044653_020 Hb_044653_020 Hb_000751_140--Hb_044653_020 Hb_003895_020 Hb_003895_020 Hb_000751_140--Hb_003895_020 Hb_003120_070 Hb_003120_070 Hb_000751_140--Hb_003120_070 Hb_000334_130 Hb_000334_130 Hb_000751_140--Hb_000334_130 Hb_000751_140--Hb_000117_070 Hb_000635_200 Hb_000635_200 Hb_000751_140--Hb_000635_200 Hb_000917_100--Hb_002005_120 Hb_000866_080 Hb_000866_080 Hb_000917_100--Hb_000866_080 Hb_002016_060 Hb_002016_060 Hb_000917_100--Hb_002016_060 Hb_015183_100 Hb_015183_100 Hb_000917_100--Hb_015183_100 Hb_002092_070 Hb_002092_070 Hb_000917_100--Hb_002092_070 Hb_001221_090 Hb_001221_090 Hb_000917_100--Hb_001221_090 Hb_000418_010 Hb_000418_010 Hb_000197_030--Hb_000418_010 Hb_000059_020 Hb_000059_020 Hb_000197_030--Hb_000059_020 Hb_001489_100 Hb_001489_100 Hb_000197_030--Hb_001489_100 Hb_026198_060 Hb_026198_060 Hb_000197_030--Hb_026198_060 Hb_002119_090 Hb_002119_090 Hb_000197_030--Hb_002119_090 Hb_006198_020 Hb_006198_020 Hb_000197_030--Hb_006198_020 Hb_012239_030 Hb_012239_030 Hb_080451_010--Hb_012239_030 Hb_000107_560 Hb_000107_560 Hb_080451_010--Hb_000107_560 Hb_080451_010--Hb_065500_030 Hb_000979_240 Hb_000979_240 Hb_080451_010--Hb_000979_240 Hb_001205_110 Hb_001205_110 Hb_080451_010--Hb_001205_110 Hb_014720_020 Hb_014720_020 Hb_002005_120--Hb_014720_020 Hb_003604_050 Hb_003604_050 Hb_002005_120--Hb_003604_050 Hb_002005_120--Hb_002016_060 Hb_002005_120--Hb_003120_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.152 33.7481 8.47266 19.7238 8.83445 11.0178
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.36903 1.61026 3.58247 14.3147 8.73549

CAGE analysis