Hb_004162_130

Information

Type -
Description -
Location Contig4162: 116727-134242
Sequence    

Annotation

kegg
ID rcu:RCOM_0476140
description hypothetical protein
nr
ID XP_002523747.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q96JG6
description Coiled-coil domain-containing protein 132 OS=Homo sapiens GN=CCDC132 PE=1 SV=3
trembl
ID B9SCM8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0476140 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41174: 117906-118016 , PASA_asmbl_41175: 132746-132943
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004162_130 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000375_350 0.0646755028 - - PREDICTED: uncharacterized protein LOC105641632 [Jatropha curcas]
3 Hb_164010_040 0.0656290863 - - serine/threonine protein kinase, putative [Ricinus communis]
4 Hb_001300_150 0.0683714313 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 3 [Jatropha curcas]
5 Hb_003728_060 0.0687932098 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 4-like [Jatropha curcas]
6 Hb_000733_200 0.0727476 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 4 [Jatropha curcas]
7 Hb_011519_010 0.0733489979 - - PREDICTED: uncharacterized protein LOC105645310 [Jatropha curcas]
8 Hb_000465_160 0.0756978923 - - PREDICTED: uncharacterized protein LOC105632297 [Jatropha curcas]
9 Hb_050514_010 0.0759136753 - - hypothetical protein 29 [Hevea brasiliensis]
10 Hb_003304_020 0.0763145979 - - Polyadenylate-binding protein RBP47C [Glycine soja]
11 Hb_003582_060 0.0771030781 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
12 Hb_013358_040 0.0773750142 - - PREDICTED: stromal cell-derived factor 2-like protein [Jatropha curcas]
13 Hb_017895_040 0.0775381265 - - hypothetical protein POPTR_0006s08120g [Populus trichocarpa]
14 Hb_002754_010 0.0776950034 - - PREDICTED: uncharacterized protein DDB_G0271670 [Jatropha curcas]
15 Hb_022250_060 0.0777531541 - - PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-1-like isoform X1 [Jatropha curcas]
16 Hb_000300_500 0.0809269551 - - PREDICTED: uncharacterized protein LOC105632604 [Jatropha curcas]
17 Hb_002681_100 0.0811026118 - - PREDICTED: glucuronokinase 1 [Jatropha curcas]
18 Hb_000340_180 0.0814289721 - - PREDICTED: mitochondrial ubiquitin ligase activator of NFKB 1 [Jatropha curcas]
19 Hb_000221_190 0.0828277912 - - PREDICTED: 14-3-3-like protein [Jatropha curcas]
20 Hb_004058_030 0.0840538781 - - PREDICTED: stomatin-like protein 2, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_004162_130 Hb_004162_130 Hb_000375_350 Hb_000375_350 Hb_004162_130--Hb_000375_350 Hb_164010_040 Hb_164010_040 Hb_004162_130--Hb_164010_040 Hb_001300_150 Hb_001300_150 Hb_004162_130--Hb_001300_150 Hb_003728_060 Hb_003728_060 Hb_004162_130--Hb_003728_060 Hb_000733_200 Hb_000733_200 Hb_004162_130--Hb_000733_200 Hb_011519_010 Hb_011519_010 Hb_004162_130--Hb_011519_010 Hb_017895_040 Hb_017895_040 Hb_000375_350--Hb_017895_040 Hb_000375_350--Hb_001300_150 Hb_000599_250 Hb_000599_250 Hb_000375_350--Hb_000599_250 Hb_005496_140 Hb_005496_140 Hb_000375_350--Hb_005496_140 Hb_002641_060 Hb_002641_060 Hb_000375_350--Hb_002641_060 Hb_013575_010 Hb_013575_010 Hb_000375_350--Hb_013575_010 Hb_002754_010 Hb_002754_010 Hb_164010_040--Hb_002754_010 Hb_000869_080 Hb_000869_080 Hb_164010_040--Hb_000869_080 Hb_062226_130 Hb_062226_130 Hb_164010_040--Hb_062226_130 Hb_013358_040 Hb_013358_040 Hb_164010_040--Hb_013358_040 Hb_001278_100 Hb_001278_100 Hb_164010_040--Hb_001278_100 Hb_002073_200 Hb_002073_200 Hb_164010_040--Hb_002073_200 Hb_000465_160 Hb_000465_160 Hb_001300_150--Hb_000465_160 Hb_001300_150--Hb_000599_250 Hb_003582_060 Hb_003582_060 Hb_001300_150--Hb_003582_060 Hb_027380_130 Hb_027380_130 Hb_001300_150--Hb_027380_130 Hb_000260_030 Hb_000260_030 Hb_001300_150--Hb_000260_030 Hb_003728_060--Hb_000375_350 Hb_002871_190 Hb_002871_190 Hb_003728_060--Hb_002871_190 Hb_050514_010 Hb_050514_010 Hb_003728_060--Hb_050514_010 Hb_003728_060--Hb_000260_030 Hb_026889_030 Hb_026889_030 Hb_003728_060--Hb_026889_030 Hb_000733_200--Hb_164010_040 Hb_000086_140 Hb_000086_140 Hb_000733_200--Hb_000086_140 Hb_005867_090 Hb_005867_090 Hb_000733_200--Hb_005867_090 Hb_000733_200--Hb_017895_040 Hb_000221_190 Hb_000221_190 Hb_000733_200--Hb_000221_190 Hb_032202_140 Hb_032202_140 Hb_011519_010--Hb_032202_140 Hb_002600_020 Hb_002600_020 Hb_011519_010--Hb_002600_020 Hb_000917_060 Hb_000917_060 Hb_011519_010--Hb_000917_060 Hb_011519_010--Hb_000465_160 Hb_004410_080 Hb_004410_080 Hb_011519_010--Hb_004410_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.31741 1.34109 2.49374 1.84317 1.1846 1.49815
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.60859 2.43735 2.46956 1.06585 1.32602

CAGE analysis