Hb_004162_180

Information

Type -
Description -
Location Contig4162: 159152-159655
Sequence    

Annotation

kegg
ID rcu:RCOM_0475580
description zinc finger protein, putative
nr
ID XP_002523741.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q9SJJ7
description RING-H2 finger protein ATL57 OS=Arabidopsis thaliana GN=ATL57 PE=2 SV=1
trembl
ID B9SCM2
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_0475580 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41180: 159217-159772
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004162_180 0.0 - - zinc finger protein, putative [Ricinus communis]
2 Hb_025645_030 0.1204508175 - - -
3 Hb_001766_030 0.1239054341 - - hypothetical protein POPTR_0017s12640g [Populus trichocarpa]
4 Hb_000110_170 0.1416289102 - - PREDICTED: arginine biosynthesis bifunctional protein ArgJ, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_003777_040 0.1470726093 - - PREDICTED: sm-like protein LSM3A [Jatropha curcas]
6 Hb_001225_010 0.1480361198 - - unnamed protein product [Coffea canephora]
7 Hb_012053_010 0.1489707276 - - srpk, putative [Ricinus communis]
8 Hb_023344_050 0.1532788567 - - PREDICTED: uncharacterized protein LOC105644474 [Jatropha curcas]
9 Hb_001449_090 0.1543338107 - - PREDICTED: NHL repeat-containing protein 2 isoform X2 [Jatropha curcas]
10 Hb_003540_200 0.1547929512 - - PREDICTED: E3 ubiquitin-protein ligase RMA3-like [Jatropha curcas]
11 Hb_000302_290 0.1660109502 - - 40S ribosomal S10-3 -like protein [Gossypium arboreum]
12 Hb_001307_210 0.1662534628 - - Os02g0814700 [Oryza sativa Japonica Group]
13 Hb_002105_030 0.1670619521 - - -
14 Hb_062135_020 0.1673211207 - - PREDICTED: probable histone H2A variant 3 [Nicotiana sylvestris]
15 Hb_147752_010 0.1676286417 - - PREDICTED: 40S ribosomal protein S9-2-like isoform X1 [Populus euphratica]
16 Hb_007254_080 0.1678568168 - - -
17 Hb_044653_060 0.1697382905 - - PREDICTED: uncharacterized protein LOC105628750 [Jatropha curcas]
18 Hb_000431_160 0.1705955171 - - PREDICTED: protein transport protein Sec61 subunit gamma-like [Jatropha curcas]
19 Hb_004108_110 0.1756790121 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001172_100 0.1761709095 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004162_180 Hb_004162_180 Hb_025645_030 Hb_025645_030 Hb_004162_180--Hb_025645_030 Hb_001766_030 Hb_001766_030 Hb_004162_180--Hb_001766_030 Hb_000110_170 Hb_000110_170 Hb_004162_180--Hb_000110_170 Hb_003777_040 Hb_003777_040 Hb_004162_180--Hb_003777_040 Hb_001225_010 Hb_001225_010 Hb_004162_180--Hb_001225_010 Hb_012053_010 Hb_012053_010 Hb_004162_180--Hb_012053_010 Hb_023344_050 Hb_023344_050 Hb_025645_030--Hb_023344_050 Hb_025645_030--Hb_001225_010 Hb_025645_030--Hb_000110_170 Hb_001172_100 Hb_001172_100 Hb_025645_030--Hb_001172_100 Hb_006420_030 Hb_006420_030 Hb_025645_030--Hb_006420_030 Hb_001766_030--Hb_000110_170 Hb_001766_030--Hb_001225_010 Hb_003540_200 Hb_003540_200 Hb_001766_030--Hb_003540_200 Hb_001449_090 Hb_001449_090 Hb_001766_030--Hb_001449_090 Hb_002105_030 Hb_002105_030 Hb_001766_030--Hb_002105_030 Hb_000878_020 Hb_000878_020 Hb_000110_170--Hb_000878_020 Hb_006588_080 Hb_006588_080 Hb_000110_170--Hb_006588_080 Hb_000110_170--Hb_003540_200 Hb_003020_330 Hb_003020_330 Hb_000110_170--Hb_003020_330 Hb_120823_010 Hb_120823_010 Hb_000110_170--Hb_120823_010 Hb_000110_170--Hb_001225_010 Hb_000975_230 Hb_000975_230 Hb_003777_040--Hb_000975_230 Hb_000445_490 Hb_000445_490 Hb_003777_040--Hb_000445_490 Hb_011377_020 Hb_011377_020 Hb_003777_040--Hb_011377_020 Hb_103118_020 Hb_103118_020 Hb_003777_040--Hb_103118_020 Hb_002809_150 Hb_002809_150 Hb_003777_040--Hb_002809_150 Hb_001307_210 Hb_001307_210 Hb_003777_040--Hb_001307_210 Hb_001225_010--Hb_001172_100 Hb_001225_010--Hb_003020_330 Hb_000203_020 Hb_000203_020 Hb_001225_010--Hb_000203_020 Hb_001225_010--Hb_001449_090 Hb_001225_010--Hb_000878_020 Hb_012053_010--Hb_002105_030 Hb_002344_070 Hb_002344_070 Hb_012053_010--Hb_002344_070 Hb_012053_010--Hb_000878_020 Hb_012053_010--Hb_003540_200 Hb_001266_030 Hb_001266_030 Hb_012053_010--Hb_001266_030 Hb_012053_010--Hb_000110_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.242284 0.341777 0.365998 1.65 0.10649 0.571279
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.3845 10.0951 3.88517 1.08083 1.94905

CAGE analysis