Hb_004162_210

Information

Type -
Description -
Location Contig4162: 174491-176096
Sequence    

Annotation

kegg
ID rcu:RCOM_0475440
description Cyclin-dependent kinases regulatory subunit, putative
nr
ID XP_002523737.1
description Cyclin-dependent kinases regulatory subunit, putative [Ricinus communis]
swissprot
ID Q9SJJ5
description Cyclin-dependent kinases regulatory subunit 2 OS=Arabidopsis thaliana GN=CKS2 PE=3 SV=1
trembl
ID B9SCL8
description Cyclin-dependent kinases regulatory subunit OS=Ricinus communis GN=RCOM_0475440 PE=3 SV=1
Gene Ontology
ID GO:0005737
description cyclin-dependent kinases regulatory subunit 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41188: 174524-176078
cDNA
(Sanger)
(ID:Location)		 029_F01.ab1: 174522-175940 , 047_E22.ab1: 174524-176019

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004162_210 0.0 - - Cyclin-dependent kinases regulatory subunit, putative [Ricinus communis]
2 Hb_001047_240 0.0800904318 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 20-like [Jatropha curcas]
3 Hb_004800_060 0.0841131956 - - PREDICTED: uncharacterized protein LOC105643856 [Jatropha curcas]
4 Hb_007875_030 0.0909568688 - - PREDICTED: tubulin-folding cofactor B-like [Jatropha curcas]
5 Hb_153544_010 0.0992456469 - - PREDICTED: coiled-coil domain-containing protein 130-like [Populus euphratica]
6 Hb_124953_020 0.1022427865 - - Mitochondrial import inner membrane translocase subunit Tim13, putative [Ricinus communis]
7 Hb_006915_040 0.103971311 - - PREDICTED: prefoldin subunit 6 [Eucalyptus grandis]
8 Hb_003018_020 0.1043174603 - - PREDICTED: uncharacterized protein LOC105628697 [Jatropha curcas]
9 Hb_001124_090 0.1056198677 - - acyl carrier protein, putative [Ricinus communis]
10 Hb_001016_150 0.105829836 - - Rop1 [Hevea brasiliensis]
11 Hb_000189_240 0.1062938895 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
12 Hb_018124_010 0.1077868503 - - PREDICTED: mitochondrial uncoupling protein 1 isoform X2 [Jatropha curcas]
13 Hb_000356_090 0.1082152141 - - PREDICTED: uncharacterized protein At2g38710 [Jatropha curcas]
14 Hb_008695_050 0.1086548224 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000923_090 0.1097784625 - - -
16 Hb_001057_040 0.1099656152 - - PREDICTED: oligosaccharyltransferase complex subunit ostc [Jatropha curcas]
17 Hb_000982_090 0.1119567231 - - PREDICTED: zinc finger HIT domain-containing protein 3 [Jatropha curcas]
18 Hb_017491_060 0.112098332 - - PREDICTED: probable complex I intermediate-associated protein 30 isoform X2 [Jatropha curcas]
19 Hb_143766_010 0.1123412531 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
20 Hb_028396_010 0.1128219902 - - PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Vitis vinifera]

Gene co-expression network

sample Hb_004162_210 Hb_004162_210 Hb_001047_240 Hb_001047_240 Hb_004162_210--Hb_001047_240 Hb_004800_060 Hb_004800_060 Hb_004162_210--Hb_004800_060 Hb_007875_030 Hb_007875_030 Hb_004162_210--Hb_007875_030 Hb_153544_010 Hb_153544_010 Hb_004162_210--Hb_153544_010 Hb_124953_020 Hb_124953_020 Hb_004162_210--Hb_124953_020 Hb_006915_040 Hb_006915_040 Hb_004162_210--Hb_006915_040 Hb_076693_030 Hb_076693_030 Hb_001047_240--Hb_076693_030 Hb_001047_240--Hb_007875_030 Hb_004784_020 Hb_004784_020 Hb_001047_240--Hb_004784_020 Hb_000331_450 Hb_000331_450 Hb_001047_240--Hb_000331_450 Hb_001318_250 Hb_001318_250 Hb_001047_240--Hb_001318_250 Hb_004800_060--Hb_124953_020 Hb_003106_220 Hb_003106_220 Hb_004800_060--Hb_003106_220 Hb_001016_150 Hb_001016_150 Hb_004800_060--Hb_001016_150 Hb_000172_640 Hb_000172_640 Hb_004800_060--Hb_000172_640 Hb_126861_010 Hb_126861_010 Hb_004800_060--Hb_126861_010 Hb_003878_010 Hb_003878_010 Hb_007875_030--Hb_003878_010 Hb_002893_050 Hb_002893_050 Hb_007875_030--Hb_002893_050 Hb_000610_050 Hb_000610_050 Hb_007875_030--Hb_000610_050 Hb_024071_020 Hb_024071_020 Hb_007875_030--Hb_024071_020 Hb_001140_370 Hb_001140_370 Hb_007875_030--Hb_001140_370 Hb_004871_020 Hb_004871_020 Hb_153544_010--Hb_004871_020 Hb_000030_290 Hb_000030_290 Hb_153544_010--Hb_000030_290 Hb_000317_070 Hb_000317_070 Hb_153544_010--Hb_000317_070 Hb_000417_360 Hb_000417_360 Hb_153544_010--Hb_000417_360 Hb_091433_020 Hb_091433_020 Hb_153544_010--Hb_091433_020 Hb_143496_010 Hb_143496_010 Hb_153544_010--Hb_143496_010 Hb_124953_020--Hb_001016_150 Hb_002078_140 Hb_002078_140 Hb_124953_020--Hb_002078_140 Hb_005365_030 Hb_005365_030 Hb_124953_020--Hb_005365_030 Hb_001863_430 Hb_001863_430 Hb_124953_020--Hb_001863_430 Hb_002192_010 Hb_002192_010 Hb_124953_020--Hb_002192_010 Hb_000087_130 Hb_000087_130 Hb_006915_040--Hb_000087_130 Hb_000189_240 Hb_000189_240 Hb_006915_040--Hb_000189_240 Hb_002000_140 Hb_002000_140 Hb_006915_040--Hb_002000_140 Hb_179296_010 Hb_179296_010 Hb_006915_040--Hb_179296_010 Hb_174865_010 Hb_174865_010 Hb_006915_040--Hb_174865_010 Hb_003376_190 Hb_003376_190 Hb_006915_040--Hb_003376_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
54.4381 30.0212 68.4514 107.353 39.776 60.9441
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
145.982 163.156 63.3907 71.5006 18.3079

CAGE analysis