Hb_004162_260

Information

Type transcription factor
Description TF Family: C2H2
Location Contig4162: 220379-221347
Sequence    

Annotation

kegg
ID rcu:RCOM_0475150
description hypothetical protein
nr
ID XP_002523729.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q681X4
description Zinc finger protein ZAT5 OS=Arabidopsis thaliana GN=ZAT5 PE=2 SV=1
trembl
ID B9SCL0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0475150 PE=4 SV=1
Gene Ontology
ID GO:0005488
description zinc finger protein zat5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004162_260 0.0 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
2 Hb_002936_080 0.1482675411 - - Protein bem46, putative [Ricinus communis]
3 Hb_014834_010 0.1602806038 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT4 [Jatropha curcas]
4 Hb_002260_030 0.1815207035 - - PREDICTED: putative glutamine amidotransferase YLR126C [Jatropha curcas]
5 Hb_007520_010 0.1845062555 - - PREDICTED: uncharacterized protein LOC105640383 [Jatropha curcas]
6 Hb_000914_170 0.1878472094 - - hypothetical protein JCGZ_25909 [Jatropha curcas]
7 Hb_000935_030 0.1987320428 - - Squalene monooxygenase, putative [Ricinus communis]
8 Hb_003336_030 0.1995271666 - - transcription factor, putative [Ricinus communis]
9 Hb_004108_090 0.2001725889 - - PREDICTED: uncharacterized protein LOC105650231 [Jatropha curcas]
10 Hb_008948_100 0.2044327934 - - PREDICTED: SPX domain-containing protein 1-like [Jatropha curcas]
11 Hb_000752_070 0.2092368402 - - PREDICTED: mavicyanin-like [Jatropha curcas]
12 Hb_000169_140 0.2115060272 - - PREDICTED: uncharacterized protein LOC105643397 [Jatropha curcas]
13 Hb_000008_360 0.2117536662 - - hypothetical protein POPTR_0004s22050g [Populus trichocarpa]
14 Hb_011379_010 0.211960037 - - Thylakoid lumenal 25.6 kDa protein, chloroplast precursor, putative [Ricinus communis]
15 Hb_000575_020 0.2133562363 - - PREDICTED: copper-transporting ATPase PAA1, chloroplastic [Jatropha curcas]
16 Hb_004672_030 0.2147444496 - - proline oxidase [Manihot esculenta]
17 Hb_091194_010 0.2156480598 - - hypothetical protein POPTR_0006s05430g [Populus trichocarpa]
18 Hb_001045_040 0.2170586966 - - PREDICTED: carbonyl reductase [NADPH] 2 [Jatropha curcas]
19 Hb_001059_170 0.2197793294 - - hexose transporter 1 [Hevea brasiliensis]
20 Hb_000429_090 0.2220754622 - - PREDICTED: carboxyl-terminal-processing peptidase 3, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_004162_260 Hb_004162_260 Hb_002936_080 Hb_002936_080 Hb_004162_260--Hb_002936_080 Hb_014834_010 Hb_014834_010 Hb_004162_260--Hb_014834_010 Hb_002260_030 Hb_002260_030 Hb_004162_260--Hb_002260_030 Hb_007520_010 Hb_007520_010 Hb_004162_260--Hb_007520_010 Hb_000914_170 Hb_000914_170 Hb_004162_260--Hb_000914_170 Hb_000935_030 Hb_000935_030 Hb_004162_260--Hb_000935_030 Hb_000530_120 Hb_000530_120 Hb_002936_080--Hb_000530_120 Hb_004672_030 Hb_004672_030 Hb_002936_080--Hb_004672_030 Hb_001045_040 Hb_001045_040 Hb_002936_080--Hb_001045_040 Hb_002609_040 Hb_002609_040 Hb_002936_080--Hb_002609_040 Hb_001823_060 Hb_001823_060 Hb_002936_080--Hb_001823_060 Hb_011379_010 Hb_011379_010 Hb_014834_010--Hb_011379_010 Hb_014834_010--Hb_000914_170 Hb_000676_340 Hb_000676_340 Hb_014834_010--Hb_000676_340 Hb_000049_110 Hb_000049_110 Hb_014834_010--Hb_000049_110 Hb_014834_010--Hb_001045_040 Hb_001357_120 Hb_001357_120 Hb_002260_030--Hb_001357_120 Hb_002774_050 Hb_002774_050 Hb_002260_030--Hb_002774_050 Hb_002260_030--Hb_000914_170 Hb_008948_100 Hb_008948_100 Hb_002260_030--Hb_008948_100 Hb_000175_030 Hb_000175_030 Hb_002260_030--Hb_000175_030 Hb_000705_290 Hb_000705_290 Hb_002260_030--Hb_000705_290 Hb_000258_100 Hb_000258_100 Hb_007520_010--Hb_000258_100 Hb_000169_140 Hb_000169_140 Hb_007520_010--Hb_000169_140 Hb_003336_030 Hb_003336_030 Hb_007520_010--Hb_003336_030 Hb_004108_090 Hb_004108_090 Hb_007520_010--Hb_004108_090 Hb_010582_010 Hb_010582_010 Hb_007520_010--Hb_010582_010 Hb_000243_080 Hb_000243_080 Hb_000914_170--Hb_000243_080 Hb_000272_140 Hb_000272_140 Hb_000914_170--Hb_000272_140 Hb_000027_150 Hb_000027_150 Hb_000914_170--Hb_000027_150 Hb_003687_150 Hb_003687_150 Hb_000914_170--Hb_003687_150 Hb_000046_100 Hb_000046_100 Hb_000914_170--Hb_000046_100 Hb_000384_130 Hb_000384_130 Hb_000935_030--Hb_000384_130 Hb_011671_390 Hb_011671_390 Hb_000935_030--Hb_011671_390 Hb_000012_130 Hb_000012_130 Hb_000935_030--Hb_000012_130 Hb_015057_060 Hb_015057_060 Hb_000935_030--Hb_015057_060 Hb_000035_430 Hb_000035_430 Hb_000935_030--Hb_000035_430 Hb_000935_030--Hb_003336_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.4532 2.07974 22.6458 18.7755 1.75343 4.24254
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
97.6213 41.2487 45.61 1.71849 35.1143

CAGE analysis