Hb_004162_270

Information

Type -
Description -
Location Contig4162: 229052-233235
Sequence    

Annotation

kegg
ID pxb:103961645
description superoxide dismutase [Cu-Zn], chloroplastic
nr
ID XP_012064679.1
description PREDICTED: superoxide dismutase [Cu-Zn], chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID O04997
description Superoxide dismutase [Cu-Zn], chloroplastic OS=Solidago canadensis var. scabra GN=SODCP PE=2 SV=1
trembl
ID A0A067LI99
description Superoxide dismutase [Cu-Zn] OS=Jatropha curcas GN=JCGZ_05426 PE=3 SV=1
Gene Ontology
ID GO:0015934
description superoxide dismutase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41192: 228074-233101 , PASA_asmbl_41194: 228113-233139
cDNA
(Sanger)
(ID:Location)		 009_D03.ab1: 229551-233024 , 012_D23.ab1: 230188-233139 , 026_G20.ab1: 228265-233091 , 038_I20.ab1: 228254-233024 , 038_N23.ab1: 228318-233094

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004162_270 0.0 - - PREDICTED: superoxide dismutase [Cu-Zn], chloroplastic isoform X1 [Jatropha curcas]
2 Hb_000684_200 0.0918506035 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
3 Hb_000270_280 0.0970584333 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
4 Hb_003680_090 0.1004013602 - - PREDICTED: threonine dehydratase biosynthetic, chloroplastic [Jatropha curcas]
5 Hb_003053_070 0.1025571619 - - PREDICTED: phosphoglucan phosphatase LSF1, chloroplastic [Jatropha curcas]
6 Hb_000395_010 0.1089574375 - - alpha/beta hydrolase domain containing protein 1,3, putative [Ricinus communis]
7 Hb_005784_030 0.112083067 - - PREDICTED: uncharacterized protein LOC105645162 isoform X2 [Jatropha curcas]
8 Hb_006420_010 0.1136657904 - - PREDICTED: uncharacterized protein LOC105649815 [Jatropha curcas]
9 Hb_004837_100 0.1178761883 - - PREDICTED: dicarboxylate transporter 1, chloroplastic [Jatropha curcas]
10 Hb_010632_020 0.1181732512 - - hypothetical protein POPTR_0006s185902g, partial [Populus trichocarpa]
11 Hb_003915_020 0.1234763981 - - PREDICTED: outer envelope pore protein 37, chloroplastic [Jatropha curcas]
12 Hb_004648_030 0.1245514302 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
13 Hb_004357_060 0.1254395815 - - PREDICTED: uncharacterized protein At4g22758 [Jatropha curcas]
14 Hb_000054_030 0.1265855233 - - hypothetical protein POPTR_0010s17680g [Populus trichocarpa]
15 Hb_158092_100 0.1276753783 - - PREDICTED: uncharacterized protein LOC105647301 [Jatropha curcas]
16 Hb_003688_140 0.1287418418 - - PREDICTED: uncharacterized protein LOC105640628 [Jatropha curcas]
17 Hb_000210_080 0.1287425946 - - PREDICTED: 2-Cys peroxiredoxin BAS1, chloroplastic-like [Jatropha curcas]
18 Hb_007904_060 0.1321543244 - - PREDICTED: very-long-chain 3-oxoacyl-CoA reductase 1 [Jatropha curcas]
19 Hb_001365_030 0.1328964648 - - PREDICTED: uncharacterized protein LOC102609547 [Citrus sinensis]
20 Hb_000352_280 0.1329931453 - - PREDICTED: acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_004162_270 Hb_004162_270 Hb_000684_200 Hb_000684_200 Hb_004162_270--Hb_000684_200 Hb_000270_280 Hb_000270_280 Hb_004162_270--Hb_000270_280 Hb_003680_090 Hb_003680_090 Hb_004162_270--Hb_003680_090 Hb_003053_070 Hb_003053_070 Hb_004162_270--Hb_003053_070 Hb_000395_010 Hb_000395_010 Hb_004162_270--Hb_000395_010 Hb_005784_030 Hb_005784_030 Hb_004162_270--Hb_005784_030 Hb_010557_010 Hb_010557_010 Hb_000684_200--Hb_010557_010 Hb_002811_250 Hb_002811_250 Hb_000684_200--Hb_002811_250 Hb_004837_100 Hb_004837_100 Hb_000684_200--Hb_004837_100 Hb_010098_040 Hb_010098_040 Hb_000684_200--Hb_010098_040 Hb_005181_120 Hb_005181_120 Hb_000684_200--Hb_005181_120 Hb_000310_060 Hb_000310_060 Hb_000270_280--Hb_000310_060 Hb_000270_280--Hb_003680_090 Hb_000940_030 Hb_000940_030 Hb_000270_280--Hb_000940_030 Hb_004648_030 Hb_004648_030 Hb_000270_280--Hb_004648_030 Hb_000270_280--Hb_005784_030 Hb_005917_020 Hb_005917_020 Hb_003680_090--Hb_005917_020 Hb_002811_310 Hb_002811_310 Hb_003680_090--Hb_002811_310 Hb_001863_180 Hb_001863_180 Hb_003680_090--Hb_001863_180 Hb_003680_090--Hb_003053_070 Hb_003053_070--Hb_004837_100 Hb_001365_020 Hb_001365_020 Hb_003053_070--Hb_001365_020 Hb_003053_070--Hb_000684_200 Hb_000516_080 Hb_000516_080 Hb_003053_070--Hb_000516_080 Hb_001365_030 Hb_001365_030 Hb_003053_070--Hb_001365_030 Hb_000210_080 Hb_000210_080 Hb_000395_010--Hb_000210_080 Hb_000395_010--Hb_000684_200 Hb_000395_010--Hb_004837_100 Hb_000805_010 Hb_000805_010 Hb_000395_010--Hb_000805_010 Hb_158092_100 Hb_158092_100 Hb_000395_010--Hb_158092_100 Hb_007904_060 Hb_007904_060 Hb_005784_030--Hb_007904_060 Hb_003664_030 Hb_003664_030 Hb_005784_030--Hb_003664_030 Hb_000264_280 Hb_000264_280 Hb_005784_030--Hb_000264_280 Hb_005784_030--Hb_000684_200 Hb_003948_020 Hb_003948_020 Hb_005784_030--Hb_003948_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.53665 13.1735 73.3827 35.6945 2.20514 3.35031
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.97243 13.7153 4.31233 26.3256 96.5165

CAGE analysis