Hb_004162_280

Information

Type -
Description -
Location Contig4162: 256061-262853
Sequence    

Annotation

kegg
ID rcu:RCOM_0474930
description hypothetical protein
nr
ID XP_012064681.1
description PREDICTED: uncharacterized protein LOC105628004 isoform X1 [Jatropha curcas]
swissprot
ID Q0VA04
description Protein smg8 OS=Xenopus tropicalis GN=smg8 PE=2 SV=1
trembl
ID A0A067L663
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05428 PE=4 SV=1
Gene Ontology
ID GO:0000184
description protein smg8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41195: 257315-257900 , PASA_asmbl_41197: 258696-261581
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004162_280 0.0 - - PREDICTED: uncharacterized protein LOC105628004 isoform X1 [Jatropha curcas]
2 Hb_144787_030 0.0536183326 - - PREDICTED: protein SLOW GREEN 1, chloroplastic [Jatropha curcas]
3 Hb_175338_020 0.0558538248 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
4 Hb_001541_020 0.0607345417 - - PREDICTED: uncharacterized protein At3g49055 [Jatropha curcas]
5 Hb_000236_100 0.06813454 - - Dynein alpha chain, flagellar outer arm [Gossypium arboreum]
6 Hb_000510_310 0.0688090577 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like [Jatropha curcas]
7 Hb_000139_250 0.0689569172 - - PREDICTED: putative methyltransferase C9orf114 [Jatropha curcas]
8 Hb_075481_030 0.0709274832 - - PREDICTED: DNA-binding protein RHL1 isoform X3 [Jatropha curcas]
9 Hb_000424_010 0.0711198235 - - PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]
10 Hb_000025_360 0.0711536099 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
11 Hb_010222_080 0.0724387213 - - PREDICTED: pentatricopeptide repeat-containing protein At2g06000 [Jatropha curcas]
12 Hb_002499_070 0.0728111809 - - PREDICTED: uncharacterized protein LOC105628378 isoform X2 [Jatropha curcas]
13 Hb_000173_510 0.075007481 - - PREDICTED: AP-5 complex subunit mu [Jatropha curcas]
14 Hb_001541_260 0.0759208573 - - PREDICTED: protein MAK16 homolog [Jatropha curcas]
15 Hb_000529_260 0.0762087067 - - PREDICTED: protein SGT1 homolog At5g65490 [Jatropha curcas]
16 Hb_002221_050 0.0776224772 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP65 isoform X1 [Jatropha curcas]
17 Hb_000107_500 0.0782292264 - - PREDICTED: protein FAR1-RELATED SEQUENCE 9 [Jatropha curcas]
18 Hb_009620_040 0.0785240124 - - PREDICTED: cyclin-T1-3-like [Jatropha curcas]
19 Hb_006649_060 0.0806889913 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000320_200 0.081637839 - - PREDICTED: U3 small nucleolar RNA-associated protein 6 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_004162_280 Hb_004162_280 Hb_144787_030 Hb_144787_030 Hb_004162_280--Hb_144787_030 Hb_175338_020 Hb_175338_020 Hb_004162_280--Hb_175338_020 Hb_001541_020 Hb_001541_020 Hb_004162_280--Hb_001541_020 Hb_000236_100 Hb_000236_100 Hb_004162_280--Hb_000236_100 Hb_000510_310 Hb_000510_310 Hb_004162_280--Hb_000510_310 Hb_000139_250 Hb_000139_250 Hb_004162_280--Hb_000139_250 Hb_001541_260 Hb_001541_260 Hb_144787_030--Hb_001541_260 Hb_144787_030--Hb_000139_250 Hb_000946_120 Hb_000946_120 Hb_144787_030--Hb_000946_120 Hb_144787_030--Hb_000236_100 Hb_000422_140 Hb_000422_140 Hb_144787_030--Hb_000422_140 Hb_000227_380 Hb_000227_380 Hb_175338_020--Hb_000227_380 Hb_000424_010 Hb_000424_010 Hb_175338_020--Hb_000424_010 Hb_002652_040 Hb_002652_040 Hb_175338_020--Hb_002652_040 Hb_000529_260 Hb_000529_260 Hb_175338_020--Hb_000529_260 Hb_007849_020 Hb_007849_020 Hb_175338_020--Hb_007849_020 Hb_022408_010 Hb_022408_010 Hb_001541_020--Hb_022408_010 Hb_000107_500 Hb_000107_500 Hb_001541_020--Hb_000107_500 Hb_002221_050 Hb_002221_050 Hb_001541_020--Hb_002221_050 Hb_000244_250 Hb_000244_250 Hb_001541_020--Hb_000244_250 Hb_002301_220 Hb_002301_220 Hb_001541_020--Hb_002301_220 Hb_000236_100--Hb_001541_260 Hb_005245_130 Hb_005245_130 Hb_000236_100--Hb_005245_130 Hb_002027_260 Hb_002027_260 Hb_000236_100--Hb_002027_260 Hb_010222_080 Hb_010222_080 Hb_000236_100--Hb_010222_080 Hb_006252_020 Hb_006252_020 Hb_000510_310--Hb_006252_020 Hb_000417_160 Hb_000417_160 Hb_000510_310--Hb_000417_160 Hb_000046_010 Hb_000046_010 Hb_000510_310--Hb_000046_010 Hb_000567_010 Hb_000567_010 Hb_000510_310--Hb_000567_010 Hb_000510_310--Hb_000107_500 Hb_000645_120 Hb_000645_120 Hb_000510_310--Hb_000645_120 Hb_002942_220 Hb_002942_220 Hb_000139_250--Hb_002942_220 Hb_023001_020 Hb_023001_020 Hb_000139_250--Hb_023001_020 Hb_000139_250--Hb_000424_010 Hb_012654_010 Hb_012654_010 Hb_000139_250--Hb_012654_010 Hb_000803_300 Hb_000803_300 Hb_000139_250--Hb_000803_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.203 13.6106 4.94068 5.13249 22.377 19.0403
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.35352 9.55816 9.71511 7.82587 5.2012

CAGE analysis